Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_D05
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc...   188   7e-49
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   4.5  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    26   7.9  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   7.9  

>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 197

 Score =  188 bits (459), Expect = 7e-49
 Identities = 88/193 (45%), Positives = 129/193 (66%), Gaps = 2/193 (1%)
 Frame = +3

Query: 216 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 395
           ++L ++V+C+SN NRSMEAH  L   G+ V S+GTG  V+LPG S D+PN Y+FG  YDE
Sbjct: 5   TNLQISVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDE 64

Query: 396 IYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWF 575
           IY +L  +D   YT NGLL MLDRNRRIK  P ++Q  +  ++++ITCEER YD + E  
Sbjct: 65  IYKELEAQDSRLYTANGLLKMLDRNRRIKRAPCRWQDQDSIYNIVITCEERCYDAICEDL 124

Query: 576 GSRRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDD-LDNDIDELLHEFESK 752
             R    N+PV+++N+DI+DNHEEA++G   I D+V K+ ++ D L+     ++ +F+S 
Sbjct: 125 YRRGETLNRPVYLINVDIKDNHEEASVGGKAILDLVNKLTEAQDKLEELFPSIMADFQSN 184

Query: 753 CHR-PIXNCIMFY 788
             + P+   I F+
Sbjct: 185 HPKLPVLYTIHFF 197


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 522  DVIITCEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQDNHEEATIGAFLI-SDMVTKMAQ 698
            +V++  E R+  + +  +GS    YN  V   ++  QD H    I A L+ +      A 
Sbjct: 993  EVLLEKEIRLLYRAMIRYGSLEHRYNDIVKYADLTTQDAHVIKKIAADLVTASRKAVSAA 1052

Query: 699  SDDLDND 719
              DL ND
Sbjct: 1053 EKDLSND 1059


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +3

Query: 588 SIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESK 752
           +I  Q   + +++IQD+  +      L+ D+  +  Q D+L++ I+ L +  E K
Sbjct: 11  TILGQKRELEDVEIQDDDIQEVSKEDLLKDVRVRSIQFDELESKIEGLQNLAEEK 65


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 441 NGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIY 596
           N L+  LD N + K  PEK  +   R+     C   VYD  ++   + RS +
Sbjct: 513 NDLVRSLDENLKTKSGPEKLYLIMARY-----CLRCVYDDKMDSLWNSRSFW 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,407
Number of Sequences: 5004
Number of extensions: 62702
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)