Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_D05
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40030-1|AAR12977.1|  235|Caenorhabditis elegans Hypothetical pr...   223   2e-58
AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical...    31   1.1  
AC006708-8|AAF60429.3|  481|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    28   7.4  

>U40030-1|AAR12977.1|  235|Caenorhabditis elegans Hypothetical
           protein T13C2.4 protein.
          Length = 235

 Score =  223 bits (544), Expect = 2e-58
 Identities = 101/193 (52%), Positives = 138/193 (71%), Gaps = 2/193 (1%)
 Frame = +3

Query: 216 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFG-VLYD 392
           S L  AV CSSNMNRSMEAH  L K+GFN++SYG+G +VK+PG + D+PNCYEFG   Y+
Sbjct: 43  SKLRFAVSCSSNMNRSMEAHGILKKRGFNIESYGSGNQVKMPGPTVDKPNCYEFGPTTYE 102

Query: 393 EIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEW 572
           +IY DL  KD + YTQNGLLHM+DRNRRIK  P++FQ     FD+++  EERV+DQV+++
Sbjct: 103 DIYADLTNKDLHLYTQNGLLHMVDRNRRIKSRPQRFQAETREFDIVLCLEERVFDQVVDF 162

Query: 573 FGSRRSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEF-ES 749
                     PVHV+NIDI+DN EEAT GAF ++D+  K+ +S+D + DID+++ +  E+
Sbjct: 163 LNRSVGKSGNPVHVINIDIEDNAEEATFGAFFVADLCEKLERSEDFEEDIDQIITDLEEN 222

Query: 750 KCHRPIXNCIMFY 788
              R + + I FY
Sbjct: 223 NPKRNLLHTICFY 235


>AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.12a protein.
          Length = 1187

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +3

Query: 252 MNRSMEAHAFLVKKGFNVKSYGT-GEKVKLPGASADRPNCYEFGVLYDEI-YNDLMEKDK 425
           M  ++  +A L +KG  +    T G K  L   +  RP  ++F +   E+ Y D++E D+
Sbjct: 76  MGTTVATNALLERKGERIGLLITKGFKDLLFIGNQARPKIFDFNIQIPEVLYEDVVEVDE 135

Query: 426 NYYTQNGLLHMLDRNRRIKPCPEKFQVCNER 518
                     +LD N +I+      Q+  E+
Sbjct: 136 RVLILEQTKELLDENAQIETTINGLQIVVEK 166


>AC006708-8|AAF60429.3|  481|Caenorhabditis elegans Hypothetical
           protein Y110A7A.15a protein.
          Length = 481

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/55 (36%), Positives = 23/55 (41%)
 Frame = +3

Query: 339 PGASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQ 503
           P    + P  Y  GV YDEI ND +  D+N    N LL M      I  C    Q
Sbjct: 162 PDLLKNEPLGYPLGVAYDEIRNDWLICDRN---MNKLLIMNVEKEEIHVCKGAIQ 213


>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
            protein Y102A11A.3 protein.
          Length = 1571

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +3

Query: 594  YNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHR 761
            Y+Q + V N+D   N +EA      I    T  ++S +   DID+L H FE  C R
Sbjct: 1140 YDQQLVVFNLD---NIQEACGQTNNIGSTETS-SKSTEQSEDIDKLDHHFEDACER 1191


>Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical
           protein F54C9.9 protein.
          Length = 740

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 585 RSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDN-DIDELLHE 740
           +SI+N   + V  +IQ+N +E  I     SDM  + +  +D DN D+DEL  E
Sbjct: 383 QSIFNDEYYGVEENIQENEDEKPI----FSDM--EDSDYEDYDNLDVDELKRE 429


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 606  VHVVNIDIQDNHEEATIGAFLISDMVTKMAQS--DDLDNDIDELLHEFE 746
            VH VN+   D  + +++ AF +SD  +   +S  D LD+DI E    F+
Sbjct: 1069 VHAVNLTKFDLSDPSSLAAFALSDDDSDSDKSTQDGLDDDISEESDAFQ 1117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,465,820
Number of Sequences: 27780
Number of extensions: 343426
Number of successful extensions: 797
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)