Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_D05
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   8.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 183 KCSVA*SNFKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEK 329
           KC+   S++        +   S ++   E + FL KKGF++  Y    K
Sbjct: 168 KCATDFSSWPYDTHRCRINFGSWVHSGEEVNIFLDKKGFHMDGYTNNSK 216


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 726 HLYHCPNHRFEPFLL 682
           H Y   NH + PF+L
Sbjct: 230 HFYFMLNHNYPPFML 244


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 726 HLYHCPNHRFEPFLL 682
           H Y   NH + PF+L
Sbjct: 230 HFYFMLNHNYPPFML 244


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/44 (20%), Positives = 24/44 (54%)
 Frame = +3

Query: 201 SNFKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKV 332
           S+ ++++ + A++   N+N + +      KKG +++ Y    K+
Sbjct: 522 SDIELANTFKAIIYGFNVNATKQIKDEANKKGVSLRFYNVVYKL 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,996
Number of Sequences: 438
Number of extensions: 4363
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)