Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_D04
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    29   0.058
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   8.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 0.058
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -3

Query: 834  GTTKPPALNGPVTGRVHSPF--TQXTGYDHDXXEXDLQACLIKGSLAVECVSVR 679
            G   PP +  P TG ++ PF   + T   H+  +  +  C  +   A +  SV+
Sbjct: 842  GVIYPPVIGTPSTGMMYKPFLIPEQTSISHENNQPTMNKCSDRKRPASQATSVK 895


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 99  VDIQISNSIKTDTVENXC 46
           ++++IS   K++TVEN C
Sbjct: 468 MNLEISTRPKSNTVENAC 485


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -2

Query: 286 SHTYRKHVXRNGGAEEDCRPENCGGNL 206
           SH    HV    G E  C  EN  G +
Sbjct: 482 SHVNISHVMVEDGGEYSCMAENRAGKV 508


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -2

Query: 286 SHTYRKHVXRNGGAEEDCRPENCGGNL 206
           SH    HV    G E  C  EN  G +
Sbjct: 482 SHVNISHVMVEDGGEYSCMAENRAGKV 508


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 378 ESVTRGVKLTERCGSFGLRTLSQIKKISQPWG 473
           +S T G  L  +CG    RT+ + +K +Q  G
Sbjct: 20  KSTTTG-HLIYKCGGIDKRTIEKFEKEAQEMG 50


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 378 ESVTRGVKLTERCGSFGLRTLSQIKKISQPWG 473
           +S T G  L  +CG    RT+ + +K +Q  G
Sbjct: 20  KSTTTG-HLIYKCGGIDKRTIEKFEKEAQEMG 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,499
Number of Sequences: 438
Number of extensions: 4282
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)