Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_D01
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   5.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   5.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.8  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +3

Query: 657 NSYTNQAMNFYPDRPTFGSFYNLLYYXXDYC*AXXLVILEDDCCHRNXCPRPXG-WL 824
           N+Y N   N Y       + Y  LYY  +Y     + +     C  N  PRP G W+
Sbjct: 94  NNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPVPIYC-GNFPPRPMGPWI 149


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 657 NSYTNQAMNFYPDRPTFGSFYNLLYYXXDY 746
           N+Y N   N+      + + Y  LYY  +Y
Sbjct: 328 NNYNNNYNNYNNYNNNYNNNYKKLYYNINY 357


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 753 LNNNLXXSKVNYKSYQMWVD 694
           +NN    +   YK Y +WVD
Sbjct: 134 INNTNNNNTNKYKDYYIWVD 153


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 441 HVSPHLHHPQLGMYTSYYSXPVA 373
           H +PH HH         +S P+A
Sbjct: 427 HATPHHHHSHAATPHHQHSTPLA 449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,941
Number of Sequences: 438
Number of extensions: 5088
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)