Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_C24
(981 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 43 8e-05
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.009
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.14
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.7
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 2.3
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 4.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 5.3
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 26 9.3
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 9.3
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 42.7 bits (96), Expect = 8e-05
Identities = 35/118 (29%), Positives = 36/118 (30%), Gaps = 3/118 (2%)
Frame = +1
Query: 553 TPPXPRGXGGXVFGAPFSXXPXQXXPLXPXXSGXGGXGXPPPPXGGGXPXSPPXXGGIPP 732
TPP P+ G P P P P SG PP P G P P PP
Sbjct: 1049 TPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGA-----PPVPAPSGIPPVPKPSVAAPP 1103
Query: 733 XKK---TXXXXXAPXXGPXNPXKRAPFXXGFXPXGPPPPPXKXXKKXPPPXXXGGAXP 897
K AP P P P G PP P K PP GA P
Sbjct: 1104 VPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP-KPSVAAPPVPAPSGAPP 1160
Score = 28.3 bits (60), Expect = 1.7
Identities = 29/105 (27%), Positives = 30/105 (28%), Gaps = 3/105 (2%)
Frame = +1
Query: 592 GAPFSXXPXQXXPLXPXXSGXGGXGXPPPPXGGGXPXSPPXXGGIPPXKKTXXXXXAPXX 771
GAP P P P SG P P P P G P K + P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSG----APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Query: 772 GPXNPXKRAPFXXGFXPXGPP---PPPXKXXKKXPPPXXXGGAXP 897
P P G P PP PP K PP A P
Sbjct: 1175 SSGIPPVPKP-AAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 27.5 bits (58), Expect = 3.1
Identities = 27/111 (24%), Positives = 27/111 (24%), Gaps = 5/111 (4%)
Frame = +1
Query: 556 PPXPRGXGGXVFGAPFSXXPXQXXPLXPXXSGXGGXGXPPPPXGGGXPXSPPXXGGIPP- 732
PP P G P P P PP P G P P PP
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171
Query: 733 --XKKTXXXXXAPXXG--PXNPXKRAPFXXGFXPXGPPPPPXKXXKKXPPP 873
P G P P AP PP PP P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.9 bits (79), Expect = 0.009
Identities = 27/100 (27%), Positives = 32/100 (32%)
Frame = +3
Query: 672 PPPXRGGXXGFXPKXXGDTPXEKNLFXPXGPPKXXXKPXKKGPLLXGXFXXXAPPPPGXX 851
PPP R G P P + P PP+ ++ P L PP P
Sbjct: 340 PPPPRSNAAGSIP-----LPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394
Query: 852 XXKXSAPXXXGGGXXPXGEXKKSXXFPPXXPPRXPPXVPP 971
SAP G PP PP PP +PP
Sbjct: 395 IPGRSAPALPPLGNASRTSTPPVPT-PPSLPPSAPPSLPP 433
Score = 29.5 bits (63), Expect = 0.76
Identities = 21/87 (24%), Positives = 24/87 (27%), Gaps = 2/87 (2%)
Frame = +1
Query: 637 PXXSGXGGXGXPPPPXG--GGXPXSPPXXGGIPPXKKTXXXXXAPXXGPXNPXKRAPFXX 810
P S PPP G P SPP P P + A
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALA 305
Query: 811 GFXPXGPPPPPXKXXKKXPPPXXXGGA 891
PPPPP + PP G +
Sbjct: 306 ANKKRPPPPPPPSRRNRGKPPIGNGSS 332
Score = 29.1 bits (62), Expect = 1.0
Identities = 20/82 (24%), Positives = 22/82 (26%)
Frame = +2
Query: 596 PPFPXXPXNXXPXPPXXPGXGEXXXPPPPKGGXXRXXPQXXXXXXXXXXXXXXXXPPXXX 775
PP P PP G PPPP R PP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPP--PPRSNAAGSIPLPPQGRSAPPPPPPRSA 369
Query: 776 PXTPKKGPPFXXXFXPXGPPPP 841
P T ++ PP PP P
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAP 391
Score = 29.1 bits (62), Expect = 1.0
Identities = 32/140 (22%), Positives = 38/140 (27%), Gaps = 6/140 (4%)
Frame = +1
Query: 556 PPXPRGXGGXVFGAPFSXXPXQXXPLXPXXSGXGGXGXPPPPXGGGXPXSPPXXGG---- 723
PP R G G S P P + G P PP G P PP
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG--SIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 724 --IPPXKKTXXXXXAPXXGPXNPXKRAPFXXGFXPXGPPPPPXKXXKKXPPPXXXGGAXP 897
PP + P P P + AP PP + PP + P
Sbjct: 374 RQPPPLSSSRAVSNPPAPPPAIPGRSAPAL---------PPLGNASRTSTPPVPTPPSLP 424
Query: 898 XXGNXKNPXXSPXXXPXXXP 957
P +P P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAP 444
Score = 27.5 bits (58), Expect = 3.1
Identities = 25/105 (23%), Positives = 26/105 (24%), Gaps = 6/105 (5%)
Frame = +1
Query: 676 PPXGGGXPXSPPXXGGIPPXKKTXXXXXAPXXGPXNPXKRAPFXXGFXPXGPPPPPXKXX 855
PP G G S PP P G P P PPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384
Query: 856 KKXPP------PXXXGGAXPXXGNXKNPXXSPXXXPXXXPXWSHP 972
PP P A P GN P P P + P
Sbjct: 385 VSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/63 (28%), Positives = 20/63 (31%)
Frame = +1
Query: 613 PXQXXPLXPXXSGXGGXGXPPPPXGGGXPXSPPXXGGIPPXKKTXXXXXAPXXGPXNPXK 792
P P P G PP P P +PP G+P AP P P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSA--PIAPPLPAGMPAAPPLPPAAPAPPPAPA-PAP 484
Query: 793 RAP 801
AP
Sbjct: 485 AAP 487
Score = 27.1 bits (57), Expect = 4.0
Identities = 27/115 (23%), Positives = 29/115 (25%), Gaps = 1/115 (0%)
Frame = +1
Query: 556 PPXPRGXGGXVFGAP-FSXXPXQXXPLXPXXSGXGGXGXPPPPXGGGXPXSPPXXGGIPP 732
PP PR P S P P + G PP G S P PP
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP-TPP 421
Query: 733 XKKTXXXXXAPXXGPXNPXKRAPFXXGFXPXGPPPPPXKXXKKXPPPXXXGGAXP 897
P P + AP P P PP PP P
Sbjct: 422 SLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
Score = 26.6 bits (56), Expect = 5.3
Identities = 20/69 (28%), Positives = 23/69 (33%)
Frame = +3
Query: 753 PXGPPKXXXKPXKKGPLLXGXFXXXAPPPPGXXXXKXSAPXXXGGGXXPXGEXKKSXXFP 932
P PP + K P+ G PPPP P G P +S P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPP-------PPPRSNAAGSIPLPPQGRSA--P 361
Query: 933 PXXPPRXPP 959
P PPR P
Sbjct: 362 PPPPPRSAP 370
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.14
Identities = 20/58 (34%), Positives = 21/58 (36%)
Frame = +1
Query: 670 PPPPXGGGXPXSPPXXGGIPPXKKTXXXXXAPXXGPXNPXKRAPFXXGFXPXGPPPPP 843
PPPP P P +PP AP G P P G P PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPP--------APIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = +1
Query: 727 PPXKKTXXXXXAPXXGPXNPXKRAPFXXGFXPXGPPPPPXKXXKKXPPP 873
PP AP P P AP G P PPPPP PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPP--APIMGGPPP--PPPPPGVAGAGPPPP 778
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +1
Query: 628 PLXPXXSGXGGXGXPPPPXG--GGXPXSPP 711
P+ P GG PPPP G G P PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 599 PFPXXPXNXXPXPPXXPGXGEXXXPPPP 682
P P P PP PG PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/66 (30%), Positives = 20/66 (30%)
Frame = +1
Query: 676 PPXGGGXPXSPPXXGGIPPXKKTXXXXXAPXXGPXNPXKRAPFXXGFXPXGPPPPPXKXX 855
PP P SP IP P P P K P PP PP
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP---- 199
Query: 856 KKXPPP 873
K PPP
Sbjct: 200 -KVPPP 204
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.7
Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = -1
Query: 891 GPPPXXGGRXFFXXFXRGGGGPXGXKXXXKGGP--FXGVXGXXXGG 760
GPPP GG F F G G G GGP F G G GG
Sbjct: 199 GPPPGPGGFGGFGGFG-GEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 970 GGTXGGXRGGFXGGXXXDF 914
GG+ GG RGGF GG F
Sbjct: 172 GGSRGGSRGGFRGGSRGGF 190
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 596 PPFPXXPXNXXPXPPXXPGXGEXXXPPPPK 685
PP P P PP GE PPP K
Sbjct: 314 PPMHHEPGEHMPPPPMHHEPGEHMPPPPFK 343
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 596 PPFPXXPXNXXPXPPXXPGXGEXXXPPP 679
PP P P PP GE PPP
Sbjct: 210 PPMHHKPGEHMPPPPMHHEPGEHMPPPP 237
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 596 PPFPXXPXNXXPXPPXXPGXGEXXXPPP 679
PP P P PP GE PPP
Sbjct: 223 PPMHHEPGEHMPPPPMHHEPGEHMPPPP 250
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 596 PPFPXXPXNXXPXPPXXPGXGEXXXPPP 679
PP P P PP GE PPP
Sbjct: 236 PPMHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 596 PPFPXXPXNXXPXPPXXPGXGEXXXPPP 679
PP P P PP GE PPP
Sbjct: 249 PPMHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 596 PPFPXXPXNXXPXPPXXPGXGEXXXPPP 679
PP P P PP GE PPP
Sbjct: 262 PPMHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 596 PPFPXXPXNXXPXPPXXPGXGEXXXPPP 679
PP P P PP GE PPP
Sbjct: 275 PPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 596 PPFPXXPXNXXPXPPXXPGXGEXXXPPP 679
PP P P PP GE PPP
Sbjct: 288 PPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 596 PPFPXXPXNXXPXPPXXPGXGEXXXPPP 679
PP P P PP GE PPP
Sbjct: 301 PPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 25.8 bits (54), Expect = 9.3
Identities = 27/114 (23%), Positives = 32/114 (28%), Gaps = 4/114 (3%)
Frame = +1
Query: 544 HKXTPPXPRGXGGXVFGAPFSXXPXQXXPLXPXXSGXGGXGXPPPPXGGGXPXSPPXXGG 723
H PP G + P P + P P G PPP PP
Sbjct: 206 HMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP---- 261
Query: 724 IPPXKKTXXXXXAPXXGPXNPXKRAPFXXGFXPXGP--PPPP--XKXXKKXPPP 873
PP P P + P G PPPP + + PPP
Sbjct: 262 -PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 614 PXNXXPXPPXXPGXGEXXXPPPP 682
P P PP PG PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 796 APFXXGFXPXGPPPPPXKXXKKXPPPXXXG 885
A G P PPPP + + PPP G
Sbjct: 2 ASLPPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 820 PXGPPPPPXKXXKKXPPPXXXGGAXPXXGNXKNPXXS 930
P PPPPP PPP G N K P S
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKN-KTPAQS 44
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 829 PPPPPXKXXKKXPPPXXXGGAXPXXG 906
PPPPP K PP A P G
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAG 1908
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 829 PPPPPXKXXKKXPPPXXXGGAXP 897
PPP P + + PP GG+ P
Sbjct: 33 PPPAPSRVQQAPPPTAVQGGSSP 55
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 775 PXNPXKRAPFXXGFXPXGPPPPP 843
P P P G P PPPPP
Sbjct: 272 PAMPMMNVPMGPGGAPLVPPPPP 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,747
Number of Sequences: 5004
Number of extensions: 36044
Number of successful extensions: 188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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