Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_C22
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   8.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 715 CPXXSPYSNLISTYLIXSXM*LYMCTIXSRY 807
           CP  S YS +    L+ + M  Y+C +   Y
Sbjct: 635 CPYPSYYSYIGVLTLVATSMPTYICYLGKAY 665


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 510 YRYHYSKL*LWCHLCTQTFLVCYLLSVLAGNFHSDMVYQC 629
           YR H  +    C  C+++F V   LSV       +  Y+C
Sbjct: 111 YRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKC 150


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 694 IMREREYCPXXSPYSN 741
           ++++REYCP    ++N
Sbjct: 467 LLQDREYCPRYIKWTN 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,756
Number of Sequences: 438
Number of extensions: 4899
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)