Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_C21
         (1008 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.1  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    23   5.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
 Frame = +1

Query: 634 GPXXPXARRPXPPXXXXPPXGXLFXPXAXPPP--PPGGXPXXRP 759
           GP     + P  P    PP      P   PPP  PPG  P   P
Sbjct: 22  GPQPSPHQSPQAPQRGSPP-----NPSQGPPPGGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 585 PXGPXGGAPPXGXXXSGPXXPPGPXP 662
           P  P  G+PP       P  PPG  P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +1

Query: 181 PXARGXPPPPXGGXXGAPXXXPPXGGXGXPPP 276
           P     P  P  G    P   PP GG    PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.3
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +3

Query: 549 PPXPXGGGLXXPPXGPXGGAPPXGXXXSGP 638
           P  P  G    P  GP  G PP       P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.4
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
 Frame = +1

Query: 190 RGXPP-----PPXGGXXGAPXXXPP 249
           RG PP     PP GG  GAP    P
Sbjct: 36  RGSPPNPSQGPPPGGPPGAPPSQNP 60


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
 Frame = +1

Query: 460 GXXLFGXPPGPPP-XXXXGGPXXXPGGGGGXPP 555
           G  LF  PPGPPP      G      G G  PP
Sbjct: 47  GPVLF--PPGPPPNNEDSSGVIVGASGYGFVPP 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.160    0.585 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,509
Number of Sequences: 438
Number of extensions: 10171
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33500103
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)