Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_C20
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 34 0.18
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.23
07_01_0080 + 587674-588510 32 0.54
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 3.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 6.6
07_01_0862 - 7172083-7172931 29 6.6
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 6.6
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 29 6.6
09_02_0415 - 8835344-8835467,8835543-8835946 28 8.7
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 28 8.7
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 28 8.7
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 33.9 bits (74), Expect = 0.18
Identities = 26/101 (25%), Positives = 30/101 (29%)
Frame = +2
Query: 455 PPPXGXGXFFXAPXPXPPXKXPXPRXXXXXXXXXXXXXXXXXXXQKXGVNPKKKXFXKXP 634
PPP G F AP P PP P P Q+ P + + + P
Sbjct: 42 PPPQGAPPPFLAPPPPPPPGPPPPH--------QPQFNFGPGPPQQQQPPPPPQMYYQPP 93
Query: 635 PKXPPXXXKXXXXGXXXXXXPPPXKXXKKXPPPXXGGGXPP 757
P PP PPP PPP PP
Sbjct: 94 PPPPPYGVNSSQ--PPPPPPPPPSPPPSAPPPPPPPPTQPP 132
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.5 bits (73), Expect = 0.23
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = +2
Query: 695 PPPXKXXKKXPPPXXGGGXPPXXXKKXXXXXXXXXXXXXXXXXXPXXXKKKPXPPXPXG 871
PPP K PPP G PP K P K P PP P G
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKG 384
>07_01_0080 + 587674-588510
Length = 278
Score = 32.3 bits (70), Expect = 0.54
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 419 GGXGIFXXXKKPPPPXGXGXFFXAPXPXPPXKXPXP 526
GG G+F PPPP P P PP P P
Sbjct: 83 GGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPPP 118
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +2
Query: 632 PPKXPPXXXKXXXXGXXXXXXPPPXKXXKKXPPPXXGGGXPP 757
PP+ PP G PPP + PPP PP
Sbjct: 276 PPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGPP 317
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 452 PPPPXGXGXFFXAPXPXPPXKXP 520
PPPP G F P P PP P
Sbjct: 551 PPPPSGNKPAFSPPPPPPPPPPP 573
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 452 PPPPXGXGXFFXAPXPXPP 508
PPP G G F AP P PP
Sbjct: 652 PPPAPGIGNKFPAPPPPPP 670
>07_01_0862 - 7172083-7172931
Length = 282
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +1
Query: 769 KKXXXXPXXTPPXX-PLFXPPPXX-KKKTXPPXXP 867
KK P PP PL PPP KKK PP P
Sbjct: 154 KKAMLFPLPLPPRKKPLLYPPPLPPKKKPLPPPSP 188
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.7 bits (61), Expect = 6.6
Identities = 25/103 (24%), Positives = 25/103 (24%), Gaps = 1/103 (0%)
Frame = +2
Query: 452 PPPPXGXGXFFXAPXPXPPXKXPXPRXXXXXXXXXXXXXXXXXXXQKXGVNPKKKXFXKX 631
PPPP G P P PP P P
Sbjct: 276 PPPPAGP------PPPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPA 329
Query: 632 PPKXPPXXXKXXXXGXXXXXXPPPXKXXKKXP-PPXXGGGXPP 757
P PP G PPP P PP G G PP
Sbjct: 330 APAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPP 372
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +2
Query: 413 PGGGXGIFXXXKKPPPPXGXGXFFXAPXPXPPXKXPXPR 529
PG G F +PPPP P P PP P PR
Sbjct: 254 PGLPAG-FPFLLRPPPPLPVPGVICRPPPSPPYFAPPPR 291
>09_02_0415 - 8835344-8835467,8835543-8835946
Length = 175
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 866 GXKGGXVFFXXXGGGXXRGXXGGVXXGXXXXFF 768
G +GG GGG RG GGV G +F
Sbjct: 74 GARGGGAGMGAMGGGTGRGAMGGVPAGACGLWF 106
>03_02_1033 +
13550955-13551700,13552837-13553290,13553451-13553648,
13553726-13553807,13554496-13554590
Length = 524
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 787 PXXTPPXXPLFXPPPXXKKKTXPPXXP 867
P TPP PL PPP PP P
Sbjct: 9 PAGTPPMAPLPVPPPIAPIPAPPPRAP 35
>03_02_1031 +
13541327-13542072,13543209-13543662,13543823-13544020,
13544098-13544179,13544868-13544962
Length = 524
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 787 PXXTPPXXPLFXPPPXXKKKTXPPXXP 867
P TPP PL PPP PP P
Sbjct: 9 PAGTPPMAPLPVPPPIAPIPAPPPRAP 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,807,537
Number of Sequences: 37544
Number of extensions: 273878
Number of successful extensions: 1129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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