Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_C20
         (895 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC040943-1|AAH40943.1|  498|Homo sapiens WAS protein family, mem...    29   2.5  
AL096774-6|CAC18518.1|  498|Homo sapiens WAS protein family, mem...    29   2.5  
AB026542-1|BAA81795.1|  498|Homo sapiens WASP-family protein pro...    29   2.5  
BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.          31   7.5  

>BC040943-1|AAH40943.1|  498|Homo sapiens WAS protein family, member
           2 protein.
          Length = 498

 Score = 29.1 bits (62), Expect(2) = 2.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 452 PPPPXGXGXFFXAPXPXPPXKXPXP 526
           PPPP G G     P P PP   P P
Sbjct: 335 PPPPVGFGSPGTPPPPSPPSFPPHP 359



 Score = 21.8 bits (44), Expect(2) = 2.5
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +2

Query: 635 PKXPPXXXKXXXXGXXXXXXPPPXKXXKKXPPPXXGGGXPP 757
           P  PP        G      PPP       PPP  G    P
Sbjct: 376 PTLPPPPLSQPTGGAPPPPPPPPPPGPP--PPPFTGADGQP 414


>AL096774-6|CAC18518.1|  498|Homo sapiens WAS protein family, member
           2 protein.
          Length = 498

 Score = 29.1 bits (62), Expect(2) = 2.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 452 PPPPXGXGXFFXAPXPXPPXKXPXP 526
           PPPP G G     P P PP   P P
Sbjct: 335 PPPPVGFGSPGTPPPPSPPSFPPHP 359



 Score = 21.8 bits (44), Expect(2) = 2.5
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +2

Query: 635 PKXPPXXXKXXXXGXXXXXXPPPXKXXKKXPPPXXGGGXPP 757
           P  PP        G      PPP       PPP  G    P
Sbjct: 376 PTLPPPPLSQPTGGAPPPPPPPPPPGPP--PPPFTGADGQP 414


>AB026542-1|BAA81795.1|  498|Homo sapiens WASP-family protein
           protein.
          Length = 498

 Score = 29.1 bits (62), Expect(2) = 2.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 452 PPPPXGXGXFFXAPXPXPPXKXPXP 526
           PPPP G G     P P PP   P P
Sbjct: 335 PPPPVGFGSPGTPPPPSPPSFPPHP 359



 Score = 21.8 bits (44), Expect(2) = 2.5
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +2

Query: 635 PKXPPXXXKXXXXGXXXXXXPPPXKXXKKXPPPXXGGGXPP 757
           P  PP        G      PPP       PPP  G    P
Sbjct: 376 PTLPPPPLSQPTGGAPPPPPPPPPPGPP--PPPFTGADGQP 414


>BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.
          Length = 673

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 28/120 (23%), Positives = 31/120 (25%)
 Frame = +2

Query: 413 PGGGXGIFXXXKKPPPPXGXGXFFXAPXPXPPXKXPXPRXXXXXXXXXXXXXXXXXXXQK 592
           PG G G+      PPPP G      A  P      P P                    Q 
Sbjct: 36  PGPGAGLLAPGPPPPPPVGSMGALTAAFPFAALPPPPP------------PPPPPPPQQP 83

Query: 593 XGVNPKKKXFXKXPPKXPPXXXKXXXXGXXXXXXPPPXKXXKKXPPPXXGGGXPPXXXKK 772
               P        PP  PP               PP      + P P  GGG  P   +K
Sbjct: 84  PPPPPPPSPGASYPPPQPPPPPPLYQRVSPPQPPPPQPPRKDQQPGPAGGGGDFPSKKRK 143


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,792,990
Number of Sequences: 237096
Number of extensions: 1343255
Number of successful extensions: 5062
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4522
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)