Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_C20
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 0.84
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.1
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 31 1.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 1.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 1.9
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 30 2.6
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 30 2.6
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 25 5.4
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 29 5.9
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 29 5.9
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 28 7.8
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.5 bits (68), Expect = 0.84
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +2
Query: 404 FXXPGGGXGIFXXXKKPPPPXGXGXFFXAPXPXPPXKXPXP 526
+ P GG G F PPPP G G + P PP P P
Sbjct: 423 YGPPQGGPGGFG----PPPPGGPGAYGPPPTGFPPVGAPPP 459
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +2
Query: 632 PPKXPPXXXKXXXXGXXXXXXPPPXKXXKKXPPPXXGG--GXPP 757
PP PP G PPP PPP GG G PP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +2
Query: 413 PGGGXGIFXXXKKPPPPXGXGXFFXAPXPXPPXKXPXP 526
PGG I PPPP G P P PP P
Sbjct: 732 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +2
Query: 632 PPKXPPXXXKXXXXGXXXXXXPPPXKXXKKXPPPXXGG--GXPP 757
PP PP G PPP PPP GG G PP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +2
Query: 413 PGGGXGIFXXXKKPPPPXGXGXFFXAPXPXPPXKXPXP 526
PGG I PPPP G P P PP P
Sbjct: 732 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +2
Query: 632 PPKXPPXXXKXXXXGXXXXXXPPPXKXXKKXPPPXXGG--GXPP 757
PP PP G PPP PPP GG G PP
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +2
Query: 413 PGGGXGIFXXXKKPPPPXGXGXFFXAPXPXPPXKXPXP 526
PGG I PPPP G P P PP P
Sbjct: 315 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +2
Query: 626 KXPPKXPPXXXKXXXXGXXXXXXPPPXKXXKKXPPPXXGGGXPP 757
K PP PP G PPP PP G G PP
Sbjct: 54 KPPPSLPPSTMPPGPHGMPFMGGPPPHHQYHLQYPPPHGLGPPP 97
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/103 (23%), Positives = 30/103 (29%)
Frame = +2
Query: 449 KPPPPXGXGXFFXAPXPXPPXKXPXPRXXXXXXXXXXXXXXXXXXXQKXGVNPKKKXFXK 628
+PPPP G + P P PP + P P G+ P +
Sbjct: 286 RPPPPPSSG-MWPPPPPPPPGRTPGP--PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMR 342
Query: 629 XPPKXPPXXXKXXXXGXXXXXXPPPXKXXKKXPPPXXGGGXPP 757
P PP PPP + PP G PP
Sbjct: 343 YPGGMPPPPPPRYPSAGPGMYPPPPPS--RPPAPPSGHGMIPP 383
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/103 (23%), Positives = 30/103 (29%)
Frame = +2
Query: 449 KPPPPXGXGXFFXAPXPXPPXKXPXPRXXXXXXXXXXXXXXXXXXXQKXGVNPKKKXFXK 628
+PPPP G + P P PP + P P G+ P +
Sbjct: 296 RPPPPPSSG-MWPPPPPPPPGRTPGP--PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMR 352
Query: 629 XPPKXPPXXXKXXXXGXXXXXXPPPXKXXKKXPPPXXGGGXPP 757
P PP PPP + PP G PP
Sbjct: 353 YPGGMPPPPPPRYPSAGPGMYPPPPPS--RPPAPPSGHGMIPP 393
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -2
Query: 519 GFFXGGXGXGAXKNXPXPXGGGGFFXXXKXPXPPPG 412
G++ G G P P G GGF P P PG
Sbjct: 649 GWYGSGGGSSMPMPVPPPGGLGGFMPPPPPPPPMPG 684
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 455 PPPXGXGXFFXAPXPXPP 508
PPP G G F P P PP
Sbjct: 664 PPPGGLGGFMPPPPPPPP 681
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -2
Query: 519 GFFXGGXGXGAXKNXPXPXGGGGFFXXXKXPXPPPG 412
G++ G G P P G GGF P P PG
Sbjct: 649 GWYGSGGGSSMPMPVPPPGGLGGFMPPPPPPPPMPG 684
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 455 PPPXGXGXFFXAPXPXPP 508
PPP G G F P P PP
Sbjct: 664 PPPGGLGGFMPPPPPPPP 681
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 507 GGXGXGAXKNXPXPXGGGGFFXXXKXPXPPP 415
GG G G+ GGGG+ P PPP
Sbjct: 276 GGGGGGSSGGYAGSSGGGGYSAPAAAPPPPP 306
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 507 GGXGXGAXKNXPXPXGGGGFFXXXKXPXPPP 415
GG G G+ GGGG+ P PPP
Sbjct: 276 GGGGGGSSGGYAGSSGGGGYSAPAAAPPPPP 306
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 25.0 bits (52), Expect(2) = 5.4
Identities = 24/102 (23%), Positives = 27/102 (26%), Gaps = 5/102 (4%)
Frame = +2
Query: 452 PPPPXGX-----GXFFXAPXPXPPXKXPXPRXXXXXXXXXXXXXXXXXXXQKXGVNPKKK 616
PPPP G G + P PP K ++ PK
Sbjct: 44 PPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPPPTGEPQDLSAEEGNASRRPPPPPKGT 103
Query: 617 XFXKXPPKXPPXXXKXXXXGXXXXXXPPPXKXXKKXPPPXXG 742
PP P G PPP K PPP G
Sbjct: 104 GTPPPPPTGEPQDLSGE--GNASRRPPPPPKGTGSPPPPPTG 143
Score = 24.6 bits (51), Expect(2) = 7.1
Identities = 13/46 (28%), Positives = 13/46 (28%)
Frame = +2
Query: 605 PKKKXFXKXPPKXPPXXXKXXXXGXXXXXXPPPXKXXKKXPPPXXG 742
P K PP G PPP K PPP G
Sbjct: 129 PPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTG 174
Score = 22.2 bits (45), Expect(2) = 5.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 716 KKXPPPXXGGGXPP 757
++ PPP G G PP
Sbjct: 156 RRPPPPPKGTGSPP 169
Score = 22.2 bits (45), Expect(2) = 7.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 716 KKXPPPXXGGGXPP 757
++ PPP G G PP
Sbjct: 187 RRPPPPPKGTGTPP 200
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +2
Query: 401 FFXXPGGGXGIFXXXKKPPPPXGXGXFFXAPXPXPPXKXP 520
F GGG G PPPP G G P P + P
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPPCGCGAPALPPLQLPRFELP 56
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +2
Query: 401 FFXXPGGGXGIFXXXKKPPPPXGXGXFFXAPXPXPPXKXP 520
F GGG G PPPP G G P P + P
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPPCGCGGPSLPPLQLPRFELP 56
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +2
Query: 401 FFXXPGGGXGIFXXXKKPPPPXGXGXFFXAPXPXPPXKXP 520
F GGG G PPPP G G P P + P
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPPCGCGAPALPPLQLPRFELP 56
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 446 KKPPPPXGXGXFFXAPXPXP 505
K PPP G FF AP P P
Sbjct: 321 KPNPPPPSAGYFFQAPPPAP 340
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,857,955
Number of Sequences: 27780
Number of extensions: 157230
Number of successful extensions: 667
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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