Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_C18
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   108   9e-25
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   108   9e-25

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  108 bits (260), Expect = 9e-25
 Identities = 48/87 (55%), Positives = 63/87 (72%)
 Frame = +2

Query: 218 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSL 397
           YDPDW+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSL
Sbjct: 48  YDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSL 107

Query: 398 EALKLVEKVQDGGRILTTQGRRDLDRI 478
           E + ++EK  +GGR ++ QG+RDLDRI
Sbjct: 108 EKIGVLEKSDNGGRRISQQGQRDLDRI 134



 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 23/50 (46%), Positives = 33/50 (66%)
 Frame = +1

Query: 76  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 225
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAP  P
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDP 50


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  108 bits (260), Expect = 9e-25
 Identities = 48/87 (55%), Positives = 63/87 (72%)
 Frame = +2

Query: 218 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSL 397
           YDPDW+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSL
Sbjct: 48  YDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSL 107

Query: 398 EALKLVEKVQDGGRILTTQGRRDLDRI 478
           E + ++EK  +GGR ++ QG+RDLDRI
Sbjct: 108 EKIGVLEKSDNGGRRISQQGQRDLDRI 134



 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 24/50 (48%), Positives = 33/50 (66%)
 Frame = +1

Query: 76  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 225
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAP  P
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDP 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,273
Number of Sequences: 5004
Number of extensions: 50402
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)