Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_C18
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   111   6e-25
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497...    28   8.8  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    28   8.8  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  111 bits (268), Expect = 6e-25
 Identities = 46/87 (52%), Positives = 65/87 (74%)
 Frame = +2

Query: 218 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSL 397
           YDPDW+Y R A+I R IY+R  +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L
Sbjct: 51  YDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQL 110

Query: 398 EALKLVEKVQDGGRILTTQGRRDLDRI 478
           + + +++    GGR++T+QGRRDLD++
Sbjct: 111 QKMGIIDVDPKGGRLITSQGRRDLDQV 137



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 27/46 (58%), Positives = 36/46 (78%)
 Frame = +1

Query: 88  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 225
           TVKDV   + VK  +AHLK++GK+++PE +D+VKTARFKEL P  P
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDP 53


>07_03_0493 +
           18747427-18748356,18748594-18748697,18749586-18749795,
           18749992-18750597,18750819-18751095,18751163-18751310,
           18751957-18752044,18752167-18752284
          Length = 826

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 320 AHQRSW*QSLLQQVSECKYDEGWQHNAHRTNQGHXGASSLKRAVFTRS 177
           A QR   Q  L  VS     EGWQH++   +Q H   + L+  V  RS
Sbjct: 671 ADQRVSAQCSLAPVSHLHQQEGWQHSSFE-HQHHENQNFLEMEVRVRS 717


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 195 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 73
           S +YK+ +LRYLD +     S S SFN+L+    L    T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,433,205
Number of Sequences: 37544
Number of extensions: 360476
Number of successful extensions: 791
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)