Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_C18
(900 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein pro... 126 1e-28
BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19 p... 126 1e-28
BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19 p... 126 1e-28
BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19 p... 126 1e-28
BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19 p... 126 1e-28
AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19 p... 126 1e-28
AB209470-1|BAD92707.1| 249|Homo sapiens proteasome beta 2 subun... 31 5.7
>M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein
protein.
Length = 145
Score = 126 bits (303), Expect = 1e-28
Identities = 60/102 (58%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Frame = +2
Query: 176 WIL*RQLAS-KSWLRYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHF 352
W+ +LA K YD +WFY R A+ RH+Y+R GV ++TKI+GGR+RNGV PSHF
Sbjct: 33 WVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHF 92
Query: 353 CRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 478
R S S+AR+ LQ+LE LK+VEK QDGGR LT QG+RDLDRI
Sbjct: 93 SRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRI 134
Score = 60.9 bits (141), Expect = 6e-09
Identities = 29/47 (61%), Positives = 36/47 (76%)
Frame = +1
Query: 76 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAP 216
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAP
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAP 47
>BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 126 bits (303), Expect = 1e-28
Identities = 60/102 (58%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Frame = +2
Query: 176 WIL*RQLAS-KSWLRYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHF 352
W+ +LA K YD +WFY R A+ RH+Y+R GV ++TKI+GGR+RNGV PSHF
Sbjct: 33 WVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHF 92
Query: 353 CRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 478
R S S+AR+ LQ+LE LK+VEK QDGGR LT QG+RDLDRI
Sbjct: 93 SRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRI 134
Score = 60.9 bits (141), Expect = 6e-09
Identities = 29/47 (61%), Positives = 36/47 (76%)
Frame = +1
Query: 76 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAP 216
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAP
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAP 47
>BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19
protein.
Length = 157
Score = 126 bits (303), Expect = 1e-28
Identities = 60/102 (58%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Frame = +2
Query: 176 WIL*RQLAS-KSWLRYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHF 352
W+ +LA K YD +WFY R A+ RH+Y+R GV ++TKI+GGR+RNGV PSHF
Sbjct: 45 WVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHF 104
Query: 353 CRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 478
R S S+AR+ LQ+LE LK+VEK QDGGR LT QG+RDLDRI
Sbjct: 105 SRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRI 146
Score = 59.7 bits (138), Expect = 1e-08
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = +1
Query: 85 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAP 216
VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAP
Sbjct: 16 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAP 59
>BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 126 bits (303), Expect = 1e-28
Identities = 60/102 (58%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Frame = +2
Query: 176 WIL*RQLAS-KSWLRYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHF 352
W+ +LA K YD +WFY R A+ RH+Y+R GV ++TKI+GGR+RNGV PSHF
Sbjct: 33 WVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHF 92
Query: 353 CRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 478
R S S+AR+ LQ+LE LK+VEK QDGGR LT QG+RDLDRI
Sbjct: 93 SRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRI 134
Score = 60.9 bits (141), Expect = 6e-09
Identities = 29/47 (61%), Positives = 36/47 (76%)
Frame = +1
Query: 76 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAP 216
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAP
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAP 47
>BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 126 bits (303), Expect = 1e-28
Identities = 60/102 (58%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Frame = +2
Query: 176 WIL*RQLAS-KSWLRYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHF 352
W+ +LA K YD +WFY R A+ RH+Y+R GV ++TKI+GGR+RNGV PSHF
Sbjct: 33 WVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHF 92
Query: 353 CRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 478
R S S+AR+ LQ+LE LK+VEK QDGGR LT QG+RDLDRI
Sbjct: 93 SRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRI 134
Score = 60.9 bits (141), Expect = 6e-09
Identities = 29/47 (61%), Positives = 36/47 (76%)
Frame = +1
Query: 76 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAP 216
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAP
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAP 47
>AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 126 bits (303), Expect = 1e-28
Identities = 60/102 (58%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Frame = +2
Query: 176 WIL*RQLAS-KSWLRYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHF 352
W+ +LA K YD +WFY R A+ RH+Y+R GV ++TKI+GGR+RNGV PSHF
Sbjct: 33 WVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHF 92
Query: 353 CRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 478
R S S+AR+ LQ+LE LK+VEK QDGGR LT QG+RDLDRI
Sbjct: 93 SRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRI 134
Score = 60.9 bits (141), Expect = 6e-09
Identities = 29/47 (61%), Positives = 36/47 (76%)
Frame = +1
Query: 76 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAP 216
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAP
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAP 47
>AB209470-1|BAD92707.1| 249|Homo sapiens proteasome beta 2 subunit
variant protein.
Length = 249
Score = 31.1 bits (67), Expect = 5.7
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +2
Query: 218 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKAL 388
Y P R +LR P G + T + GGR+ G S CR G R+AL
Sbjct: 179 YTPTISRERAVELLRKCLEEGPGGAGSSTALGGGRRSVGQDRSSSCRRKGRGRRRAL 235
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,707,264
Number of Sequences: 237096
Number of extensions: 2119476
Number of successful extensions: 3690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3690
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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