Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_C18
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   108   6e-24
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   108   6e-24

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  108 bits (259), Expect = 6e-24
 Identities = 50/87 (57%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
 Frame = +2

Query: 221 DPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLE 400
           DPDWFY R A++ RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE
Sbjct: 50  DPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLE 108

Query: 401 ALKLVEKVQDG-GRILTTQGRRDLDRI 478
            +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 109 KIKWVEKHPDGKGRILSKQGRKDLDRI 135



 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = +1

Query: 79  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 225
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP  P
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDP 51


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  108 bits (259), Expect = 6e-24
 Identities = 50/87 (57%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
 Frame = +2

Query: 221 DPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLE 400
           DPDWFY R A++ RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE
Sbjct: 50  DPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLE 108

Query: 401 ALKLVEKVQDG-GRILTTQGRRDLDRI 478
            +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 109 KIKWVEKHPDGKGRILSKQGRKDLDRI 135



 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = +1

Query: 79  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 225
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP  P
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDP 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,089,657
Number of Sequences: 27780
Number of extensions: 309606
Number of successful extensions: 680
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)