Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_C17
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    49   1e-06
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    44   4e-05
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    33   0.077
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     29   0.72 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   2.9  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    27   3.8  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.0  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    26   8.8  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 24/64 (37%), Positives = 33/64 (51%)
 Frame = +2

Query: 386 RNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCAPEYAYXSQVAAHXXSPPNATLHFE 565
           R  PF   +G   +I  W  GVP M  GE   LT  P+Y Y  +       PPN+TL F+
Sbjct: 43  RGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPR-GFPGLIPPNSTLLFD 101

Query: 566 IEMI 577
           +E++
Sbjct: 102 VELL 105



 Score = 39.1 bits (87), Expect = 9e-04
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 283 AQGEGNETPNQGCHVSVHYVGTLLDGTKFDSS 378
           + G G + P  G  +++HY GTL +G KFDSS
Sbjct: 9   SSGNGQDFPKPGDRITMHYTGTLTNGKKFDSS 40


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 22/64 (34%), Positives = 36/64 (56%)
 Frame = +2

Query: 386 RNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCAPEYAYXSQVAAHXXSPPNATLHFE 565
           + +PF F LG+  VI  W +GV  M++G    +T     AY +Q  +    P N+TL FE
Sbjct: 297 KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQ--SIPGIPKNSTLVFE 354

Query: 566 IEMI 577
           ++++
Sbjct: 355 VKLV 358


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 32.7 bits (71), Expect = 0.077
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +2

Query: 392 EPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCAPEYAYXSQVAAHXXSPPNATLHFEIE 571
           +PF F LG + VI+ W +G+  M+ G    +      AY S+       P N+ L F+++
Sbjct: 300 KPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYGSK--RLPGIPANSDLVFDVK 357

Query: 572 MI 577
           ++
Sbjct: 358 LL 359


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 465 FFIVGTPIFHASITPSLPKQNSNGSFLXPAGIKLGT 358
           F  + TP+ H S +P L  Q  +G+F+   G KLGT
Sbjct: 190 FDSIHTPVVHRSNSPKLNSQKVSGTFIG-KGKKLGT 224


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -2

Query: 504 AYSGAQVRMQTSPFFIVGTPIFHASITPSLPKQNSNGSFLXPAGI 370
           AYSG+    +TS   I  TP      +PSL  Q +  SF   A I
Sbjct: 320 AYSGSSC--ETSQHTIANTPFLAYDRSPSLTNQEAESSFQDVASI 362


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +2

Query: 254 RSWSPKTNYQRKERVTKLLTKDAM*ACIMXGHY*MVPSLIPAGXR-NEPFEFCLGKDGVI 430
           R WS   N Q  + ++K+LT       I  GH   V  L     + N P    L  DG +
Sbjct: 364 RCWSLPAN-QTSDSISKILTGST----IFQGHEDCVWELFCHEVKDNNPILLSLSSDGTV 418

Query: 431 EAWK 442
             WK
Sbjct: 419 RGWK 422


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 317 PWLGVSLPSPCAGNS 273
           PWL + LPSPC  NS
Sbjct: 191 PWLFLVLPSPCITNS 205


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 233 SRYYKEWRSWSPKTNYQRKERVT 301
           +R YK W SWS   +Y +++ V+
Sbjct: 35  NRIYKYWDSWSASKSYTKQKVVS 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,205
Number of Sequences: 5004
Number of extensions: 63907
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)