Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_C17
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.57 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   2.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   5.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 394  FVSVPCWNQTWYHLVVSXHNARSHGILG*EF 302
            FV +     TWYHL V+ HN     +   EF
Sbjct: 1519 FVVLDLVPATWYHLRVTAHNNAGFAVAEYEF 1549



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 585 DWKILVLPXNKGHTAPISSKXGYR 656
           D K LVLP  + H   +  + GY+
Sbjct: 154 DGKYLVLPSGELHIRDVGPEDGYK 177


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 17/64 (26%), Positives = 25/64 (39%)
 Frame = -1

Query: 565 LKVQCCIWRGXXVGCHLAPVGIFRSTSQNANFTLLHCRHTNFPCFYYTIFAQTKFERFVS 386
           LK +  I  G  VG    P   F  +   ++ T+L   HT+F      I  +T       
Sbjct: 261 LKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQ 320

Query: 385 VPCW 374
           V C+
Sbjct: 321 VECY 324


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 252 HSL*YRLPDPQSLFYFSNQTFFKN 181
           H+L Y  P  ++L+Y + ++  K+
Sbjct: 262 HNLYYNSPSSENLYYVNTESLMKS 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,579
Number of Sequences: 438
Number of extensions: 5054
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)