Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_C16
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 30 0.50
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 29 0.87
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.5
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 28 2.0
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 27 2.7
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 3.5
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 6.1
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 26 6.1
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 26 8.1
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 29.9 bits (64), Expect = 0.50
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +1
Query: 364 LGDANGKAKEALEQSRQNIERTAEELRKAHPD---VEKNATALREKLQAAVQNTVQESQK 534
+ +A KA+++LEQ+ + E L K H + E+ + +EKL A ++ + S++
Sbjct: 52 INEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEE 111
Query: 535 L---AKKVSSKR 561
L +SSKR
Sbjct: 112 LDHYRAIISSKR 123
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 29.1 bits (62), Expect = 0.87
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +1
Query: 391 EALEQSRQNIE-RTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSKRAG 567
+ E++ + I+ R+ EEL++A + + A +EK + + + K+ +K + + A
Sbjct: 28 DQFEETEEEIKKRSPEELKQAIEALREKAKEKKEKERILALEEKKTNYKILQKSNDETAQ 87
Query: 568 D**ETGAQDQGRLRRLREEHPGGDQEDPGGRQRQAVSVDIE 690
QDQ RLR L++ Q+ QR+ + +IE
Sbjct: 88 A--MRKMQDQARLRDLQKIR---QQKAEDAEQRKKILAEIE 123
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/60 (21%), Positives = 28/60 (46%)
Frame = +1
Query: 382 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSKR 561
KA + LE+ ++ E + EE+ H + T+ + + + +QE ++ K + R
Sbjct: 353 KACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEKIIQEKSRVDKMIDEYR 412
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 370 DANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQE-SQKLAKK 546
+AN + E E ++ IE R+A ++ E+ + Q +E S+KLA+K
Sbjct: 804 EANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLERQRRIQQERDEEISRKLAEK 863
Query: 547 VSSKRA 564
+++RA
Sbjct: 864 AAARRA 869
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +1
Query: 370 DANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKV 549
D + +E E S++ E E+ RKA D +N R+K+ + + +E +KL ++
Sbjct: 115 DQMKRIQERDESSKKLRESNIEKARKAIDDFYENFNDKRDKV---IAKSRKEQEKLLEEN 171
Query: 550 SSKRAG 567
SK G
Sbjct: 172 ESKSTG 177
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 385 AKEALEQSRQNIERTAEELRK-AHPDVEKNATALRE 489
A E +++ +IER+A K A + E+ ATALRE
Sbjct: 157 ASERAREAQSSIERSASLREKQAREEAERAATALRE 192
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 382 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQ 531
KAKE ++ R +RTA E+RK +E+ R + A Q + Q
Sbjct: 164 KAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRAERAAEAQRVAGKEQ 213
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 397 LEQSRQNIERTAEELRKAHPDVEK 468
+EQ+R E T E++++A P++EK
Sbjct: 126 IEQARPTEEITIEDMKQAVPEIEK 149
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = +1
Query: 382 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSS 555
K+++ LE S Q +E E + P+V++ +EK ++ V+ +E +K+++ + S
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-EKISRNLRS 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,709
Number of Sequences: 5004
Number of extensions: 31481
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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