Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_C16
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 32 0.70
04_01_0180 + 2034021-2034023,2034741-2035088 31 1.6
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706... 30 2.1
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665 30 2.8
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 30 2.8
03_05_0373 + 23581812-23583293 29 3.7
02_04_0315 - 21969416-21970756 29 3.7
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 29 4.9
08_02_0776 - 21083181-21083187,21083256-21083683,21083800-210840... 29 6.5
03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401 29 6.5
05_05_0149 - 22733703-22736216 28 8.6
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +1
Query: 361 ALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKL 537
A+ DA G+ ++A+E ++ E+L A+PDVE L E L+ A ++ ++ + L
Sbjct: 515 AIYDAMGRVEDAIEILEHVLKVREEKLGTANPDVEDEKLRLAELLKEAGRSRNRKQKSL 573
>04_01_0180 + 2034021-2034023,2034741-2035088
Length = 116
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 391 EALEQSRQNIERTAEELRKAHPDVEKNATALREK---LQAAVQN 513
EALE+ QN+ R EE +K H +++K L K L AA +N
Sbjct: 52 EALERQVQNLTRYKEEKQKQHANLQKEFAELERKYRDLDAAHRN 95
>06_01_0916 +
7058991-7059050,7060057-7061235,7061778-7063481,
7063557-7064432,7064457-7064660,7065039-7065143,
7065407-7065496,7066066-7066176,7066349-7066780
Length = 1586
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 382 KAKEALEQSR-QNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSK 558
+ + LE R Q ++RT+E+L + + ++ LRE + A Q + + +V +K
Sbjct: 647 RIRSQLESERVQRLQRTSEKLNRVNEWQAVRSSKLREVMNARHQRSESRHEAYLAQV-AK 705
Query: 559 RAGD 570
RAGD
Sbjct: 706 RAGD 709
>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
Length = 727
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 370 DANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKL 537
DA G+ EA+E + E+L A+PDV+ L E L+ A + ++++ L
Sbjct: 637 DAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGRGRSRKAKSL 692
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 388 KEALEQSRQNIERTAEELR-KAHPDVEKNATALREKLQAAVQNTVQESQ 531
K+ +QS ERT E + KAH ++ K E +QAA +QE Q
Sbjct: 416 KQDAKQSDPKKERTVSEAKEKAHDEMNKGRAYGNETVQAASVKQMQEEQ 464
>03_05_0373 + 23581812-23583293
Length = 493
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 454 GGPCGAPRPCARCSASTVPKPPW 386
GG A +RCSAST PK PW
Sbjct: 56 GGYGSAASSPSRCSASTPPKSPW 78
>02_04_0315 - 21969416-21970756
Length = 446
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +1
Query: 370 DANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKV 549
D NG + ALE++ + + E L A + K A+ EK ++A++ QE++ L
Sbjct: 246 DENGSLRRALERAVEEVNAANESLELATGENSKLQDAVAEK-ESAMEALRQENESLKASE 304
Query: 550 SSKR 561
+ R
Sbjct: 305 AEAR 308
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 376 NGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSS 555
+G ++ LE+ R+ IER AEE + + E+ A A R + + +E + A++
Sbjct: 193 SGPSRVTLERLREGIERRAEE-EERRAEEERRAEAERAAAEERARREEEEGRARAEEERR 251
Query: 556 KR 561
+R
Sbjct: 252 RR 253
>08_02_0776 -
21083181-21083187,21083256-21083683,21083800-21084048,
21084172-21084248,21084351-21084483
Length = 297
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 367 GDANGKAKEAL-EQSRQNIERTAEELRKAHPDVE-KNATALREKLQAA-VQNTVQESQKL 537
GD++G AKE L + SR ++ E RK +E K LR + Q +Q+ ++ +Q++
Sbjct: 120 GDSDGDAKEGLRDSSRSMVQMQREVQRKLQEQIEVKRHLQLRMEAQGRYLQSVLRRAQQV 179
>03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401
Length = 500
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +1
Query: 367 GDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALR---EKLQAAVQNTVQESQKL 537
GD G+ + A+ +R E A LR+A ++ A ALR E+ + A + E+ +
Sbjct: 47 GDGEGEGEGAVVLARVEAEEEAAALREAVAAAQETAAALRSEVEEERLAAASAASEAMAM 106
Query: 538 AKKVSSKRA 564
++ ++A
Sbjct: 107 MLRLQREKA 115
>05_05_0149 - 22733703-22736216
Length = 837
Score = 28.3 bits (60), Expect = 8.6
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = +1
Query: 430 AEELRKAHPDVEKNATALREKLQAAVQNTVQE--SQKLAKKVSSKRAGD**ETGAQDQGR 603
AE + K H +N+ + +++ Q E SQ K+ S G E QD+G
Sbjct: 409 AEFVEKLHEPEPQNSGFMNSSQESSCQEEDSEVTSQYAKKQTSDSIDGSKNEVEKQDKGS 468
Query: 604 LRRLREEHP---GGDQED 648
L ++HP G D ED
Sbjct: 469 EGPLVQQHPDTNGSDGED 486
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,641,435
Number of Sequences: 37544
Number of extensions: 248044
Number of successful extensions: 1176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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