Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_C14
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.40 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 22/60 (36%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
 Frame = -2

Query: 902 GGVGGPXXXGXARXGXXXXGGXPP--PAXKG*XGGPPXSRKGXRXGXGSRXXG--GGPGG 735
           GG GG    G    G    GG P       G  GG P    G   G G    G  GGPGG
Sbjct: 208 GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 19/58 (32%), Positives = 20/58 (34%)
 Frame = -2

Query: 875 GXARXGXXXXGGXPPPAXKG*XGGPPXSRKGXRXGXGSRXXGGGPGGXSPXXGXLPRG 702
           G    G     G PPP   G  G      +G   G G    GGGPGG     G    G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHG-GHGGFGGGPGGFEGGPGGFGGG 243


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 35/163 (21%), Positives = 40/163 (24%), Gaps = 1/163 (0%)
 Frame = +2

Query: 431  PXPRXLAPSXRSXGCGERXPLPXRRXPVSPGLGGXAGXPCSRXPPXGXVPXXAAWXRTPI 610
            P P   AP           P+P    PV     G    P     P   +P   A    P 
Sbjct: 1025 PLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084

Query: 611  GAXPXGXLPXXRXPXPRCQXPTGLXXXRDVPPGXGSLXWGXXXXXXXXXXGXXFRPXSLS 790
               P G  P  +        P        VP   G+                   P    
Sbjct: 1085 VPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK 1144

Query: 791  GXAVAPPF-IPSXQAGGPPPXXXXRXGPXXGXGVPXPPPXXAG 916
                APP   PS     P P       P    G+P  P   AG
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG 1187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,390
Number of Sequences: 5004
Number of extensions: 17619
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)