Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_C10
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-38|AAY55888.1|  246|Caenorhabditis elegans Hypothetical...    30   2.5  
U80814-2|AAB37993.1|  335|Caenorhabditis elegans Serpentine rece...    29   5.8  
AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin reu...    29   5.8  
AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of...    29   5.8  

>AC024791-38|AAY55888.1|  246|Caenorhabditis elegans Hypothetical
           protein Y47G6A.32 protein.
          Length = 246

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 734 NSPSTDASXAASFIVVSRIPNPTARPP---LTKQSHLP 630
           N PST  S     +++ RI N T  PP    TK S++P
Sbjct: 145 NGPSTQHSSGVLSVLIHRIRNETTTPPTPSTTKSSYIP 182


>U80814-2|AAB37993.1|  335|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 8 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -2

Query: 870 VLXXPSAFAVRIQRQFKVINVLRVXNRPRSXXNRNLHSQLV 748
           ++  P A  ++I R+ K+IN+L +     +  +RNLH+QL+
Sbjct: 194 IISIPLAIGIQILRR-KIINLLVLKGVDLTTKSRNLHAQLL 233


>AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin
           reuptake transporter protein.
          Length = 671

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 458 LKSALRFIKRAYWR--WTGVPYAYLVLEIMASVSPAISIIPVKDYAFGYSSGVLPNKLGL 631
           +++ L F    YWR  WT  P    V+ IM   + +   I +  Y F + S +L   L L
Sbjct: 549 IRAMLGFYPGIYWRVCWTCSPVFISVIFIMTVYNSSFKPIQMASYTFPWWSVILGWFLRL 608

Query: 632 VNGIAL 649
           ++ +A+
Sbjct: 609 LSVLAI 614


>AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 5 protein.
          Length = 671

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 458 LKSALRFIKRAYWR--WTGVPYAYLVLEIMASVSPAISIIPVKDYAFGYSSGVLPNKLGL 631
           +++ L F    YWR  WT  P    V+ IM   + +   I +  Y F + S +L   L L
Sbjct: 549 IRAMLGFYPGIYWRVCWTCSPVFISVIFIMTVYNSSFKPIQMASYTFPWWSVILGWFLRL 608

Query: 632 VNGIAL 649
           ++ +A+
Sbjct: 609 LSVLAI 614


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,606,051
Number of Sequences: 27780
Number of extensions: 419042
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)