Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_C08
(872 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 113 4e-26
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 85 9e-18
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 29 0.86
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc... 27 2.6
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 26 6.1
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 26 8.1
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 113 bits (271), Expect = 4e-26
Identities = 63/148 (42%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Frame = +2
Query: 131 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 310
Y+L+E + G++LF V +++AA +V+ S+ D+ +F VV L +F P K+A ALEN
Sbjct: 4 YLLYESATGYSLFDVVGADQIAAKTKEVQLSLQDISKFGKVVQLRSFIPFKNAAHALENA 63
Query: 311 NAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAI-SEALEIQCTHTGAVPEI 487
N +SEG+L + L FLE LPK K+ K +LGV D L +I SE I+C + ++
Sbjct: 64 NDISEGVLNDFLKNFLELNLPKASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDL 123
Query: 488 LRGIRYHFHSLIKGLTLKACSVAQLGLG 571
LRGIR+H L+K L+ AQLGLG
Sbjct: 124 LRGIRFHGDKLLKQLSPGDFERAQLGLG 151
Score = 108 bits (260), Expect = 9e-25
Identities = 48/78 (61%), Positives = 61/78 (78%)
Frame = +3
Query: 561 LALGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIXEWYSYHFPXLVSIVP 740
L LGHSYSRA+VKFNV+R DNMIIQ+IA+LDQLDKD+NTF+MR+ EWYS+HFP L IV
Sbjct: 148 LGLGHSYSRAKVKFNVNRNDNMIIQAIAILDQLDKDINTFAMRMKEWYSWHFPELSKIVG 207
Query: 741 ENHLYTKCAEFIKXRKTL 794
+N+ Y + + T+
Sbjct: 208 DNYKYAVIVTLVGDKTTI 225
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 85.4 bits (202), Expect = 9e-18
Identities = 35/68 (51%), Positives = 51/68 (75%)
Frame = +3
Query: 558 SLALGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIXEWYSYHFPXLVSIV 737
SL L HS SR ++KF+ +VD MI+Q+IALLD LDK++NT++MR+ EWY +HFP + I+
Sbjct: 140 SLGLSHSLSRHKLKFSPDKVDTMIVQAIALLDDLDKELNTYAMRVREWYGWHFPEMGKII 199
Query: 738 PENHLYTK 761
+N Y +
Sbjct: 200 QDNLAYAR 207
Score = 68.1 bits (159), Expect = 2e-12
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Frame = +2
Query: 131 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 310
++L E +AG+A+F+ + +L + E + + + ++ L +F +S + AL+N+
Sbjct: 2 FILTETAAGYAIFKAKD--KLLKKRDALIEDLKSPEGASNLLKLQSFAKFESTVDALDNV 59
Query: 311 NAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISE--ALEIQCTHTGAVPE 484
+A+ EG + L+ LEG L K TL V DPKLG AI++ LE + +V +
Sbjct: 60 SALVEGKVSSKLSSLLEG-LSDSKSS---TLVVADPKLGNAINKLPGLEFEIISDSSVQD 115
Query: 485 ILRGIRYHFHSLIKGLTLKACSVAQLGL 568
+ RGIR H SLI GL + LGL
Sbjct: 116 LYRGIREHLSSLISGLAPSDLNAMSLGL 143
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 29.1 bits (62), Expect = 0.86
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 621 NMIIQSIALLDQLDKDVNTFSMRIXEWYSYHFPXLVSIVPENHLYTK 761
++I+ S ++ ++D ++ + EWY FP L S+V Y K
Sbjct: 118 HLIVDSNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCK 164
>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
reductase AKR3C2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 284
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 146 HSAGFALFRVAEFEEL---AAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIV 295
HS G + FR+ + EEL + P+V + Q + A L+ F K IV
Sbjct: 138 HSVGVSNFRIPDLEELLKTSTITPRVNQIEFHPQVYKAAKPLVEFCQSKGIIV 190
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/35 (25%), Positives = 24/35 (68%)
Frame = +2
Query: 230 DLQRFNAVVTLIAFQPHKSAIVALENINAVSEGIL 334
D++ NA++ L+ P++S ++ E++++ +G+L
Sbjct: 521 DVESQNAILLLLGCFPNQSPVLISESVSSYIQGVL 555
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 281 CVVEKLLKSQQH*NVANLSRTLRPEAGKPLTL 186
CV+ L+ ++H ++ L + PEAGK + L
Sbjct: 44 CVILGTLEFRKHRSIRRLQSMIVPEAGKSIQL 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,439,273
Number of Sequences: 5004
Number of extensions: 71033
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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