Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_C07
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.90 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   4.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 686 ERRTGIP*SGRGRNRRAHEGASRGK 612
           +++T I  +GRG+ R   +G SRG+
Sbjct: 70  DKKTDIEETGRGKGRGHGKGGSRGR 94


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = -3

Query: 558 DFCDARSGGRSLWKNASNAAFLRFLAFCW 472
           D C   SGG  LW+N      +      W
Sbjct: 343 DACQMDSGGPVLWQNPRTKRLVNIGIISW 371


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 557 STLKSEVAKPDRTIKIPGVSPWKLPRALSCSDPCRFTGYLSAFLP 691
           S++  +VA   R   IP +SP    +AL  SD  RF  Y +  +P
Sbjct: 79  SSVSLQVANLLRLFHIPQISPASTAKAL--SDKTRF-DYFARTVP 120


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 557 STLKSEVAKPDRTIKIPGVSPWKLPRALSCSDPCRFTGYLSAFLP 691
           S++  +VA   R   IP +SP    +AL  SD  RF  Y +  +P
Sbjct: 169 SSVSLQVANLLRLFHIPQISPASTAKAL--SDKTRF-DYFARTVP 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,305
Number of Sequences: 438
Number of extensions: 4951
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)