Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_C05
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 223 3e-59
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 223 3e-59
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 223 3e-59
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 139 5e-34
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.84
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 4.5
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 6.0
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 7.9
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 223 bits (545), Expect = 3e-59
Identities = 108/122 (88%), Positives = 115/122 (94%)
Frame = +1
Query: 187 KLRXKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 366
K KQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE
Sbjct: 15 KAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 74
Query: 367 IAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 546
IAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI PKD+QLARR+RGE
Sbjct: 75 IAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGE 134
Query: 547 RA 552
R+
Sbjct: 135 RS 136
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +3
Query: 144 MARTKQTARKSTGGKAPR*TTCYKSGAK 227
MARTKQTARKSTGGKAPR K+ K
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARK 28
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 223 bits (545), Expect = 3e-59
Identities = 108/122 (88%), Positives = 115/122 (94%)
Frame = +1
Query: 187 KLRXKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 366
K KQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE
Sbjct: 15 KAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 74
Query: 367 IAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 546
IAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI PKD+QLARR+RGE
Sbjct: 75 IAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGE 134
Query: 547 RA 552
R+
Sbjct: 135 RS 136
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +3
Query: 144 MARTKQTARKSTGGKAPR*TTCYKSGAK 227
MARTKQTARKSTGGKAPR K+ K
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARK 28
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 223 bits (545), Expect = 3e-59
Identities = 108/122 (88%), Positives = 115/122 (94%)
Frame = +1
Query: 187 KLRXKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 366
K KQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE
Sbjct: 15 KAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 74
Query: 367 IAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 546
IAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI PKD+QLARR+RGE
Sbjct: 75 IAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGE 134
Query: 547 RA 552
R+
Sbjct: 135 RS 136
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +3
Query: 144 MARTKQTARKSTGGKAPR*TTCYKSGAK 227
MARTKQTARKSTGGKAPR K+ K
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARK 28
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 139 bits (336), Expect = 5e-34
Identities = 75/118 (63%), Positives = 93/118 (78%), Gaps = 10/118 (8%)
Frame = +1
Query: 220 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-- 381
A+KS + G + +P RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61
Query: 382 --KTD--LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 543
TD LR+QS A+ LQEA+EA+LV LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct: 62 NFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 29.1 bits (62), Expect = 0.84
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 250 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAA 411
+ + HR + +L E + +++ S LLI P Q +RE+A DF +F +
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566
Query: 412 IGALQEASEAYLVGLFE 462
+ A E EAY+ L E
Sbjct: 567 LEAPDEEQEAYIRSLQE 583
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 513 LRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLETQI-SFEILSDFSHKTLERQL 337
LR+ T + + + QA LE S + Q+ SFEIL +TLE
Sbjct: 73 LRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESS 132
Query: 336 TDKQLSR 316
++ +SR
Sbjct: 133 SNPNISR 139
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 6.0
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -2
Query: 474 QVGVFEQANEISLACLLESSDGGRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTN 298
Q+G F +AN I A + + E + EIL ER L+ K+ +R T+N
Sbjct: 112 QIGAFFKANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPER-LSTKKGNRSHTTSN 169
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 286 ALREIRRYQKSTELLIRKLPFQR 354
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,654
Number of Sequences: 5004
Number of extensions: 58246
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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