Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_C04
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 92 1e-19
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 62 8e-11
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 52 8e-08
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 35 0.014
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 32 0.096
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual 29 0.68
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 28 2.1
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 6.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 8.4
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 26 8.4
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr... 26 8.4
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/86 (47%), Positives = 53/86 (61%)
Frame = +2
Query: 260 GCHVSVHYVGTLLDGTKFDSSRDRNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCAP 439
G +++HY GTL +G KFDSS DR PF +G +I W GVP M GE LT P
Sbjct: 20 GDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITP 79
Query: 440 EYAYGASGSPPKIPPNATLQFEIEMI 517
+Y YG G P IPPN+TL F++E++
Sbjct: 80 DYGYGPRGFPGLIPPNSTLLFDVELL 105
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 62.5 bits (145), Expect = 8e-11
Identities = 33/86 (38%), Positives = 50/86 (58%)
Frame = +2
Query: 260 GCHVSVHYVGTLLDGTKFDSSRDRNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCAP 439
G V + Y+G L +G FD + + +PF F LG+ VI W +GV M++G +T
Sbjct: 275 GKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPA 333
Query: 440 EYAYGASGSPPKIPPNATLQFEIEMI 517
AYG + S P IP N+TL FE++++
Sbjct: 334 PMAYG-NQSIPGIPKNSTLVFEVKLV 358
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 52.4 bits (120), Expect = 8e-08
Identities = 29/83 (34%), Positives = 46/83 (55%)
Frame = +2
Query: 269 VSVHYVGTLLDGTKFDSSRDRNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCAPEYA 448
VS+ Y+G L +G FD + +PF F LG + VI+ W +G+ M+ G + A
Sbjct: 279 VSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMA 337
Query: 449 YGASGSPPKIPPNATLQFEIEMI 517
YG S P IP N+ L F+++++
Sbjct: 338 YG-SKRLPGIPANSDLVFDVKLL 359
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 35.1 bits (77), Expect = 0.014
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +2
Query: 257 QGCHVSVHYVGTLLDGTKFDSSRDRNEPFEFCLGKDGVIEAWKIGVPTMKKGEVCILTCA 436
+G V+ Y+G+LLDG + F LG DGV+ AW++ V +++ + + C
Sbjct: 1201 EGSRVAQIYLGSLLDGGTKKVLVSPDSSFFVTLGSDGVVRAWQL-VESVR--HISTMRCE 1257
Query: 437 PEYAYG 454
+YG
Sbjct: 1258 CRLSYG 1263
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 32.3 bits (70), Expect = 0.096
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -1
Query: 468 GLPLAP*AYSGAQVRMQTSPFFIVGTPIFHASITPSLPKQNSNGSF 331
G P+ P AYSG+ +TS I TP +PSL Q + SF
Sbjct: 313 GSPIPPTAYSGSSC--ETSQHTIANTPFLAYDRSPSLTNQEAESSF 356
>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 29.5 bits (63), Expect = 0.68
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -1
Query: 492 VAFGGIFGGLPLAP*AYSGAQVRMQTSPFFIVGTPIFHASITPSLPKQNSNGSFL 328
+ F + GGLP G M + F + TP+ H S +P L Q +G+F+
Sbjct: 162 LGFSFLTGGLPSLVVLGFGIISAMIVNFFDSIHTPVVHRSNSPKLNSQKVSGTFI 216
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = -3
Query: 661 FAITLQSPF*FNCDQCTIVGTVKTCTSLEDMAQYAFVLGRTKIFQSPINHFNLKLQCCIW 482
F IT P N +G T + +A++ +LG+T +F +H L Q +
Sbjct: 132 FVITSPPP---NVTGALHIGHALTIAIQDSLARWNRMLGKTVLFLGGFDHAGLSTQSVVE 188
Query: 481 RDFWW 467
+ W+
Sbjct: 189 KKLWY 193
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 401 MKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMIDWRLEDLSPTKNKGILRHILE 580
+KK + C P S SP N++ + WRL L P + + ++ H+LE
Sbjct: 537 IKKQRLVEQGCEPIRKTDESHSPNSKTDNSSTHKQELYGPWRLLRLLPRETRAVIAHMLE 596
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 8.4
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = -1
Query: 441 SGAQVRMQTSPFFIVGTPIFHASIT---PSLPK-QNSNGSFLSLLESNLVPSSS 292
S + V +QTS I+ +PI +S+T S P +S + S+L+PSSS
Sbjct: 547 SNSSVSLQTSSSLIISSPIISSSLTATSTSTPALTHSITPSNTSYTSSLIPSSS 600
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 281 NARSHGILG*EFRYPLLXLVIRFRTPRSP 195
N++SH G E PLL R R P SP
Sbjct: 407 NSKSHSQTGSEHSTPLLDTKYRKRLPHSP 435
>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 177 SRYYKEWRSWSPKTNYQGKERVTKL 251
+R YK W SWS +Y K++V L
Sbjct: 35 NRIYKYWDSWSASKSYT-KQKVVSL 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,650,988
Number of Sequences: 5004
Number of extensions: 80463
Number of successful extensions: 216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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