Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_C03
(896 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U66358-1|AAC47472.1| 149|Drosophila melanogaster RpL27a protein. 89 8e-18
U66357-1|AAC47475.1| 149|Drosophila melanogaster ribosomal prot... 89 8e-18
AY071144-1|AAL48766.1| 149|Drosophila melanogaster RE17991p pro... 89 8e-18
AE014134-746|AAF51006.3| 149|Drosophila melanogaster CG15442-PA... 89 8e-18
X74484-1|CAA52601.1| 149|Drosophila melanogaster ribosomal prot... 87 3e-17
>U66358-1|AAC47472.1| 149|Drosophila melanogaster RpL27a protein.
Length = 149
Score = 89.0 bits (211), Expect = 8e-18
Identities = 39/71 (54%), Positives = 44/71 (61%)
Frame = +2
Query: 116 KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFX 295
+KKTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GMRNFH
Sbjct: 6 RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65
Query: 296 KEQEFLSSFEL 328
++ +F L
Sbjct: 66 RQHKFRPEINL 76
Score = 29.5 bits (63), Expect = 6.5
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +3
Query: 291 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTC 470
L + F P +NLDKLW+LV + + K P + ++ + P
Sbjct: 64 LRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPV 123
Query: 471 HSKSKVLLKISREE-NQGCGWCL 536
K+K K + ++ + G CL
Sbjct: 124 IVKAKYFSKKAEDKIKKAGGVCL 146
>U66357-1|AAC47475.1| 149|Drosophila melanogaster ribosomal protein
RpL27a protein.
Length = 149
Score = 89.0 bits (211), Expect = 8e-18
Identities = 39/71 (54%), Positives = 44/71 (61%)
Frame = +2
Query: 116 KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFX 295
+KKTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GMRNFH
Sbjct: 6 RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65
Query: 296 KEQEFLSSFEL 328
++ +F L
Sbjct: 66 RQHKFRPEINL 76
Score = 29.5 bits (63), Expect = 6.5
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +3
Query: 291 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTC 470
L + F P +NLDKLW+LV + + K P + ++ + P
Sbjct: 64 LRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPV 123
Query: 471 HSKSKVLLKISREE-NQGCGWCL 536
K+K K + ++ + G CL
Sbjct: 124 IVKAKYFSKKAEDKIKKAGGVCL 146
>AY071144-1|AAL48766.1| 149|Drosophila melanogaster RE17991p
protein.
Length = 149
Score = 89.0 bits (211), Expect = 8e-18
Identities = 39/71 (54%), Positives = 44/71 (61%)
Frame = +2
Query: 116 KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFX 295
+KKTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GMRNFH
Sbjct: 6 RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65
Query: 296 KEQEFLSSFEL 328
++ +F L
Sbjct: 66 RQHKFRPEINL 76
Score = 29.5 bits (63), Expect = 6.5
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +3
Query: 291 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTC 470
L + F P +NLDKLW+LV + + K P + ++ + P
Sbjct: 64 LRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPV 123
Query: 471 HSKSKVLLKISREE-NQGCGWCL 536
K+K K + ++ + G CL
Sbjct: 124 IVKAKYFSKKAEDKIKKAGGVCL 146
>AE014134-746|AAF51006.3| 149|Drosophila melanogaster CG15442-PA
protein.
Length = 149
Score = 89.0 bits (211), Expect = 8e-18
Identities = 39/71 (54%), Positives = 44/71 (61%)
Frame = +2
Query: 116 KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFX 295
+KKTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GMRNFH
Sbjct: 6 RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65
Query: 296 KEQEFLSSFEL 328
++ +F L
Sbjct: 66 RQHKFRPEINL 76
Score = 29.5 bits (63), Expect = 6.5
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +3
Query: 291 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTC 470
L + F P +NLDKLW+LV + + K P + ++ + P
Sbjct: 64 LRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPV 123
Query: 471 HSKSKVLLKISREE-NQGCGWCL 536
K+K K + ++ + G CL
Sbjct: 124 IVKAKYFSKKAEDKIKKAGGVCL 146
>X74484-1|CAA52601.1| 149|Drosophila melanogaster ribosomal protein
L27a protein.
Length = 149
Score = 87.0 bits (206), Expect = 3e-17
Identities = 38/71 (53%), Positives = 43/71 (60%)
Frame = +2
Query: 116 KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFX 295
+KKTRKLRGHVS N GG HHHRIN DKYHPGYFGK+GMRNFH
Sbjct: 6 RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNLGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65
Query: 296 KEQEFLSSFEL 328
++ +F L
Sbjct: 66 RQHKFRPEINL 76
Score = 29.9 bits (64), Expect = 4.9
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +3
Query: 291 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTC 470
L + F P +NLDKLW+LV + + K P + ++ + P
Sbjct: 64 LRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPV 123
Query: 471 HSKSKVLLKISREE-NQGCGWCL 536
K+K K + ++ + G CL
Sbjct: 124 IVKAKYFSKKAEDKIKEAGGVCL 146
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,368,644
Number of Sequences: 53049
Number of extensions: 606744
Number of successful extensions: 1754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4362070239
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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