Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_C02
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.8  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   8.4  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   8.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -3

Query: 446  NEHALCNGCS--PPSSLALKSGS 384
            +EHA+  GC+  PP++ ++KS S
Sbjct: 1743 HEHAMTEGCASPPPAATSMKSVS 1765


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -3

Query: 446  NEHALCNGCS--PPSSLALKSGS 384
            +EHA+  GC+  PP++ ++KS S
Sbjct: 1739 HEHAMTEGCASPPPAATSMKSVS 1761


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 703 TGPLPRPPPHSARLSARAWWKSPPDRGASYPRCS*CSDRRRAGGELCKRRL 551
           T   P P P  A   + +   SPP +GA+          +R GGE  K+ L
Sbjct: 507 TNSSPSPNPRIASAPSSSTSSSPPAKGAAAAG----QPSKRNGGETNKQEL 553


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 150 CYMVSHLIFTKTMAVFVHFRDFFHTKHVLIQLLD 49
           CYM   +I TK M   V   DFF  K+  + LL+
Sbjct: 70  CYMKCIMIATKAMKNDVILWDFF-VKNARMILLE 102


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 150 CYMVSHLIFTKTMAVFVHFRDFFHTKHVLIQLLD 49
           CYM   +I TK M   V   DFF  K+  + LL+
Sbjct: 44  CYMKCIMIATKAMKNDVILWDFF-VKNARMILLE 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,005
Number of Sequences: 438
Number of extensions: 5972
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)