Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_C01
(977 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.007
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.14
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.25
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 9.3
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 26 9.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.3 bits (80), Expect = 0.007
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = -3
Query: 708 GAPPXXPPPXXXGGTGPXXPPPGXXPXGXPP--XAXGXXXXGPXPXXPPPP 562
G PP PPP G GP PPP PP A G P P P P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP------PPPAVSAGGSRYYAPAPQAEPEP 803
Score = 33.9 bits (74), Expect = 0.035
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = -1
Query: 893 PXGGGPXPRGGXXPPXPXRGGAXPPPXXXPPP 798
P GGP P PP P GA PPP PPP
Sbjct: 756 PIMGGPPP----PPPPPGVAGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.57
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Frame = -3
Query: 705 APPXXPPPXXXGGTGPXX---PPPGXXPXGXPPXAX--GXXXXGPXPXXPPPP 562
+PP PP P PPP G PP G GP P PPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP-PPPPP 782
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -1
Query: 854 PPXPXRGGAXPPPXXXPPPXXEXAXP 777
PP P GG PPP PPP A P
Sbjct: 753 PPAPIMGGPPPPP---PPPGVAGAGP 775
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.14
Identities = 23/82 (28%), Positives = 24/82 (29%), Gaps = 1/82 (1%)
Frame = -3
Query: 807 PPPPXXTRXXAPLXGEGGXXXXXXGRXGXXRGXGAPPXXPPPXXXGGTGPXXPPPGXXP- 631
PPPP P G G R A PP G + P PPP P
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP--QGRSAPPPPPPRSAPS 371
Query: 630 XGXPPXAXGXXXXGPXPXXPPP 565
G P P PPP
Sbjct: 372 TGRQPPPLSSSRAVSNPPAPPP 393
Score = 29.1 bits (62), Expect = 1.00
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -3
Query: 660 PXXPPPGXXPXGXPPXAXGXXXXGPXPXXPPP 565
P PPP G PP G P PPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 27.5 bits (58), Expect = 3.0
Identities = 26/117 (22%), Positives = 30/117 (25%), Gaps = 3/117 (2%)
Frame = -1
Query: 950 RXGXXXPPXXGXGXXXXXXPXGGGPXPRGGXXPPXPXRGGAXPPPXXXPPPXXEXAXPRX 771
R PP P P P P +G + PPP PPP + R
Sbjct: 319 RRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP---PPPRSAPSTGRQ 375
Query: 770 XXXRXGGGXXXGGGXXP--XEGXARPXXXPXXXPXXGXAXXXP-PPXXPXXXPPPXP 609
P G + P P P PP P PP P
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/42 (28%), Positives = 14/42 (33%)
Frame = -3
Query: 687 PPXXXGGTGPXXPPPGXXPXGXPPXAXGXXXXGPXPXXPPPP 562
PP G + PPP P + G PPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 26.2 bits (55), Expect = 7.0
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = -3
Query: 702 PPXXPPPXXXGGTGPXXPP-PGXXPXGXPPXAXGXXXXGPXPXXPPPP 562
PP PP G P PP P P PP G P P P P
Sbjct: 432 PPSAPPSLPMGA--PAAPPLPPSAPIA-PPLPAGMPAAPPLPPAAPAP 476
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.25
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +2
Query: 563 GGGGXXGXGPXXXX--PXAXGGXPXGXXPGGGXXGPVPPXXXGGGXXGGAP 709
GG G G GP P GG P G G G G P GG G P
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Frame = -3
Query: 702 PPXXPPPXXXGGTG-PXXPPPGXXPXGXPPXAXGXXXXGPXPXXPPPP 562
PP PP G P PPP P P A P PP P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 25.8 bits (54), Expect = 9.3
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = -3
Query: 705 APPXXPPPXXXGGTG-PXXPPPGXXPXGXPPXAXGXXXXGPXPXXPPPP 562
AP PP G P PPP P P + G P PP P
Sbjct: 1173 APSSGIPPVPKPAAGVPPVPPPSEAPP-VPKPSVGVPPVPPPSTAPPVP 1220
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = -3
Query: 702 PPXXPPPXXXGGTGPXXPPPGXXPXGXPPXAXGXXXXGPXPXXPPPP 562
P PP T P PPP P PP + GP P PPPP
Sbjct: 1694 PQSAAPPQMSAPTPP--PPPMSVP---PPPSAPPMPAGP-PSAPPPP 1734
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -2
Query: 703 APXXPPXXXPXXDXPXXPPPRXXPXGXPPP 614
AP PP P PP P PPP
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -3
Query: 702 PPXXPPPXXXGGTGPXXPPPG 640
PP PPP + P P PG
Sbjct: 1727 PPSAPPPPLPASSAPSVPNPG 1747
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = -3
Query: 705 APPXXPPPXXXGGTGPXXPPPGXXPXGXPPXAXGXXXXGPXPXXPPPPXG 556
APP PP P P P PP P P P G
Sbjct: 1881 APPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTG 1930
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 25.8 bits (54), Expect = 9.3
Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Frame = -3
Query: 708 GAPPXXPPPXXX--GGTGPXXPPPGXXPXGXPPXAXGXXXXGPXPXXPPPPXG 556
G PP P G G P P G P G PPPP G
Sbjct: 82 GPPPMDPSMRGSLLSGPGVARPAGRGIPLGQAPVGLAGPVRGVGYTAPPPPAG 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,368
Number of Sequences: 5004
Number of extensions: 23469
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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