Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B24
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    30   0.52 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   2.8  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    26   6.4  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   6.4  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   6.4  

>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
 Frame = +3

Query: 459  SWCTNKRLWRRNN*EK----TYPCQSCSI*KRWSE---TYENEI 569
            S C N+RLWRRN  EK    T P    S   RW++   T+ N I
Sbjct: 948  SICYNQRLWRRNRNEKLIYRTRPLAEYSTNGRWNQQLMTFNNTI 991


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 389 KNCFLHRRNTSRCRSHRILE*KMLLVHQ*KVMEKKQLGEDVPMSVMQ 529
           KN  L   NT   R  + +  K+L +HQ   +EK QL   +  +V++
Sbjct: 198 KNSILENNNTWLSRELQGVNDKLLSLHQEASLEKSQLSSQLSDAVLE 244


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -1

Query: 179 RSLLSVLFNRMVKKNSTSLLLFHRQKFPIKLIK 81
           R+++   ++R +K NST+ +LF  + +P+  +K
Sbjct: 207 RTVIKEHWSRFLKDNSTAFILFALEVYPMHRLK 239


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 157 LTEWLKKTQPPYCYFIVKN 101
           L ++ K  QPPYC FI K+
Sbjct: 243 LRKYYKSDQPPYCCFIDKD 261


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 252 QTKFRTNTRYFSSEKESGLTKSKSKESASHVSTDV 356
           + K+ ++ RY SS K+SG+ ++   +      T++
Sbjct: 22  RNKYHSHVRYLSSAKKSGILRNSYNQRTERYFTNI 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,676
Number of Sequences: 5004
Number of extensions: 57003
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)