Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_B24
(908 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808... 45 7e-05
08_02_0010 - 11230407-11232416 31 0.96
08_02_0009 + 11216532-11218687,11220727-11225998 31 0.96
08_02_0006 + 11204835-11206382 31 0.96
08_02_0003 + 11180421-11180757,11180773-11185715 31 0.96
08_02_0002 + 11173365-11173512,11173528-11178470 31 0.96
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 30 2.9
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 30 2.9
08_01_1086 - 11150017-11151564 30 2.9
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 28 8.9
02_02_0537 + 11308195-11309667 28 8.9
01_05_0645 - 23899579-23904483 28 8.9
>03_02_0394 -
8081172-8081330,8082015-8082134,8082223-8082271,
8083193-8083371,8083583-8083852,8084480-8084631,
8085694-8085715,8086314-8086430
Length = 355
Score = 45.2 bits (102), Expect = 7e-05
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +1
Query: 439 DPRVEDALGAPIKGYGEEXXXXXXXH-VSHAVY-EKDGVKHMRMRFYIKGIRNKGVVELD 612
D +V +G P+ GYG E + + V+ ++DGV+H+ + FYI+G G V +
Sbjct: 261 DSQVTAKIGYPVTGYGNESRNRAARQRIPNKVWTDEDGVEHVEVNFYIRGPHGAGKVYSE 320
Query: 613 M-KQNDYGNYMCRYLLVQL 666
M K N+ ++ YL+V++
Sbjct: 321 MFKDNNDRSWKFTYLIVEI 339
>08_02_0010 - 11230407-11232416
Length = 669
Score = 31.5 bits (68), Expect = 0.96
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = -3
Query: 696 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFHSI 541
N K FS ++ ISA S ++ FHI NN S+P N S S H I
Sbjct: 274 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDI 320
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 31.5 bits (68), Expect = 0.96
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = -3
Query: 696 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFHSI 541
N K FS ++ ISA S ++ FHI NN S+P N S S H I
Sbjct: 2080 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDI 2126
>08_02_0006 + 11204835-11206382
Length = 515
Score = 31.5 bits (68), Expect = 0.96
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = -3
Query: 696 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFHSI 541
N K FS ++ ISA S ++ FHI NN S+P N S S H I
Sbjct: 120 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDI 166
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 31.5 bits (68), Expect = 0.96
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = -3
Query: 696 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFHSI 541
N K FS ++ ISA S ++ FHI NN S+P N S S H I
Sbjct: 1364 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDI 1410
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 31.5 bits (68), Expect = 0.96
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = -3
Query: 696 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFHSI 541
N K FS ++ ISA S ++ FHI NN S+P N S S H I
Sbjct: 1301 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDI 1347
>11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -3
Query: 696 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFH 547
N K FS ++ ISA S ++ FHI NN S+P N S S H
Sbjct: 1110 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRH 1154
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -3
Query: 696 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFH 547
N K FS ++ ISA S ++ FHI NN S+P N S S H
Sbjct: 721 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRH 765
>08_01_1086 - 11150017-11151564
Length = 515
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -3
Query: 696 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFH 547
N K FS ++ ISA S ++ FHI NN S+P N S S H
Sbjct: 120 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRH 164
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -3
Query: 696 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFH 547
N K FS ++ IS S ++ FHI NN S+P N S S H
Sbjct: 962 NTKVFSDKIL-----ISTDPASSMVAFHININNLLQSFPHNKPSSSTKRH 1006
>02_02_0537 + 11308195-11309667
Length = 490
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -3
Query: 696 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFH 547
N K FS ++ IS S ++ FHI NN S+P N S S H
Sbjct: 120 NTKVFSDKIL-----ISTDPASSMVAFHININNLLQSFPHNKPSSSTKRH 164
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -3
Query: 696 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFH 547
N K FS ++ IS S ++ FHI NN S+P N S S H
Sbjct: 1239 NTKVFSDKIL-----ISTDPASSMVAFHININNLLQSFPHNKPSSSTKRH 1283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,468,953
Number of Sequences: 37544
Number of extensions: 306027
Number of successful extensions: 623
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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