Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B24
         (908 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000892-1|AAH00892.1|  248|Homo sapiens C18orf55 protein protein.     73   1e-12

>BC000892-1|AAH00892.1|  248|Homo sapiens C18orf55 protein protein.
          Length = 248

 Score = 73.3 bits (172), Expect = 1e-12
 Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
 Frame = +1

Query: 442 PRVEDALGAPIKGYGEEXXXXXXXHVSHAVYEKDGVKHMRMRFYIKGIR--NKGVVELDM 615
           P V    G  +KGYGE        HV    Y KDG+KH  ++FYI+G     +G V   +
Sbjct: 153 PEVIGVFGESVKGYGEVTRRGRRQHVRFTEYVKDGLKHTCVKFYIEGSEPGKQGTVYAQV 212

Query: 616 KQN-DYGNYMCRYLLVQLDDYSGKTFIIEDNRAELD 720
           K+N   G Y  RY+ V+++ Y  +T IIEDNR++ D
Sbjct: 213 KENPGSGEYDFRYIFVEIESYPRRTIIIEDNRSQDD 248


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,850,997
Number of Sequences: 237096
Number of extensions: 1865747
Number of successful extensions: 3271
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3270
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)