Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B24
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045646-13|AAK29831.1|  213|Caenorhabditis elegans Hypothetical...    74   2e-13
U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical p...    30   2.0  
AF039042-5|AAC48246.1|  307|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z83233-7|CAB05764.2|  340|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U23179-5|AAK68210.2|  347|Caenorhabditis elegans Serpentine rece...    28   8.0  
AF016447-2|AAG24012.1|  339|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AF045646-13|AAK29831.1|  213|Caenorhabditis elegans Hypothetical
           protein F56B3.11a protein.
          Length = 213

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 34/90 (37%), Positives = 56/90 (62%)
 Frame = +1

Query: 439 DPRVEDALGAPIKGYGEEXXXXXXXHVSHAVYEKDGVKHMRMRFYIKGIRNKGVVELDMK 618
           D R ++  GA I G+GEE       HV+H  YEKDG++ +R+ F++KG R++G+ + +M+
Sbjct: 125 DGRCQEIFGASIAGFGEETSRGRRRHVAHHKYEKDGMQRIRVLFHVKGDRDEGIAQAEME 184

Query: 619 QNDYGNYMCRYLLVQLDDYSGKTFIIEDNR 708
           Q D G++  R+L V+       T ++ DNR
Sbjct: 185 QRD-GDWQWRFLYVENKRRPKTTHVLIDNR 213


>U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical
           protein F27C1.11 protein.
          Length = 1037

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 204 PLLRNGSTTEKIPAILQTKFRTNTRYFSSEKES 302
           P L   ST EK+P IL  ++     Y  SEK+S
Sbjct: 131 PYLNENSTKEKLPQILPKRYAPREAYSISEKKS 163


>AF039042-5|AAC48246.1|  307|Caenorhabditis elegans Hypothetical
           protein ZK697.3 protein.
          Length = 307

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
 Frame = -3

Query: 675 VVIKLYQQISAHIVSIIILFHIK----FNNTFISYPFNIESHSHMFHSIFFIY-CMTDMG 511
           ++ K+ +Q+ + I S +ILF++     F   F+S+ + + + +   H I  I+ C  ++ 
Sbjct: 133 ILEKIKKQMFSCIFSSVILFYLTKVLIFVTAFMSFFYRLRNSTGSKHFIITIHLCKGNIV 192

Query: 510 TSSPSCFFSI---TFYWCTKSIFYSRIL*LRHRE 418
                 F  I   TF+W  K +F+     L+ RE
Sbjct: 193 ELDMMKFLPILIITFFWLKKILFFLLSKGLKSRE 226


>Z83233-7|CAB05764.2|  340|Caenorhabditis elegans Hypothetical
           protein K06B4.7 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = -3

Query: 711 SSVVLNYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFN------IESHSHMF 550
           S+ VLN    S  VI  + ++       ++L  + F N  IS  F+      + SH   F
Sbjct: 217 STAVLNQ--VSGQVIAKFVELKIKDEEYLLLILVMFCNPSISNDFSDKTKLALSSHQQAF 274

Query: 549 HSIFFIYCMTDMGTSSPSCF 490
            S  F YC  +   S+P+ F
Sbjct: 275 CSALFRYCQINYSKSAPTRF 294


>U23179-5|AAK68210.2|  347|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 2 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = -3

Query: 636 VSIIILFHI----KFNNTFISYPFNIESHSHMFHSIFFIYCMTDMGTSSPSCFF 487
           + + +L+H+    KF ++FIS+    E+ +  F+S F+     ++G    +C F
Sbjct: 158 IDLALLYHVFRDEKFEDSFISFALVPETSAIPFNSYFWELLYAEIGNFICNCIF 211


>AF016447-2|AAG24012.1|  339|Caenorhabditis elegans Hypothetical
           protein C54F6.9 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -3

Query: 675 VVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFHSIFFIYCMTDMGTSSPS 496
           ++I+L       I+  +I F    NN   S   ++ SH + F +  F YC       +PS
Sbjct: 235 IIIELKMTNEEFILLNLIFFLRIDNNLSESAKISLASHQNFFTNALFEYCQLKYERRAPS 294

Query: 495 CF 490
            F
Sbjct: 295 RF 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,305,124
Number of Sequences: 27780
Number of extensions: 315105
Number of successful extensions: 766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)