Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B24
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   8.9  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 180 MTLISKFLPLLRNGSTTEKIPAILQTKFRTNTRYFSSEKESGLTK 314
           +TL++K   L   G  + K PAI ++    N  YF  +++S + K
Sbjct: 132 VTLMTK-ATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMK 175


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 306 LTKSKSKESASHVSTDVRPLGEKIKETTKTVSY 404
           +  S   ES   V T   PLG +I+ +T+T+ +
Sbjct: 289 VNNSVGGESVETVLTVTAPLGAEIEPSTQTIDF 321


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 214 RKSGKNLDIKVIVHF*VCYLTEWLKKTQPPYCYFIVKNF 98
           R SG+ L I ++    VCYL  +L    P     I++ F
Sbjct: 547 RASGRELTIILLAGVLVCYLNTFLLLATPTTVTCILQRF 585


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 214 RKSGKNLDIKVIVHF*VCYLTEWLKKTQPPYCYFIVKNF 98
           R SG+ L I ++    VCYL  +L    P     I++ F
Sbjct: 637 RASGRELTIILLAGVLVCYLNTFLLLATPTTVTCILQRF 675


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 573 IESHSHMFHSIFFIYCMTD 517
           IES SH    + FI+ MTD
Sbjct: 150 IESLSHTTQDLVFIWNMTD 168


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 255 TKFRTNTRYFSSEKESGLTKSKSKESASHVSTDVRPL-GEKIKETTK 392
           TK+ +   YFSS+       S+S+ S+     D RPL  E I ++ K
Sbjct: 301 TKYGSGECYFSSD------LSESETSSDEEEADTRPLKKEPITQSNK 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,826
Number of Sequences: 438
Number of extensions: 3937
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)