Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B23
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    27   2.7  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   3.6  
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    26   8.2  

>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +1

Query: 157 FCAESKSTDKLLNLQTDCQKHEEVLLKLAFLNAVYVDVSDKNSLPKTAC 303
           +C + K+   L   + +   HE+  +   F N + +D+++  S P T C
Sbjct: 284 YCPKDKTLVHLSPPERELSVHEDAFIGSFFDNQLAIDIAEGRSNPITKC 332


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = +1

Query: 316 ESLNKAYEFLQSVKQAQDVLI-GLFSTSEDNKCELSDDDQNSAFDDFLSLNESVDIKLE- 489
           + L+K +E  Q + Q +   I G    S + + E+S DD+   F+D      S D ++E 
Sbjct: 576 DRLSKKWENPQLLAQLKSRFITGSLLDSIEGQEEVSQDDEEGDFEDLEDEENSSDNEMEE 635

Query: 490 ----TIAQENESLVD 522
               ++  ENE   D
Sbjct: 636 SSGSSVTAENEESAD 650


>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 349 SVKQAQDVLIGLFSTSEDNKCELSDDDQNSAFDDFLSLNESVDIK 483
           S+   +  L GLF+  + ++ +  DD+  S+++D+ S     D+K
Sbjct: 31  SLDNMKSTLSGLFAPLKLDEEQAEDDESLSSYEDYASRQIDDDLK 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,862
Number of Sequences: 5004
Number of extensions: 49532
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)