Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B23
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512     30   2.1  
07_03_1367 + 26072270-26072374,26074047-26074724                       29   3.7  
12_02_0289 - 16914975-16916238,16916246-16916484                       29   6.5  

>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
          Length = 957

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 247 LNAVYVDVSDKNSLPKTACLICYESLNKAYEFLQSV--KQAQDVLIGLFSTSEDNKCELS 420
           L  V ++ +D +++ K+A  + YES  +  + +  V  KQ   VL  + +TSED     S
Sbjct: 228 LQLVPLESADLSNVRKSA--VSYESRGEGNDAMDHVTSKQRNVVLKNMANTSEDKSAVSS 285

Query: 421 DDD 429
           DDD
Sbjct: 286 DDD 288


>07_03_1367 + 26072270-26072374,26074047-26074724
          Length = 260

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 160 CAESKSTDKLLNLQTDC-QKHEEVLLKLAFLNAVYVDVSDKNSLPKTACLI 309
           C+++K+ D LL+    C  ++ E L+    L+  Y D +DK  +P++  +I
Sbjct: 180 CSKNKAGDTLLSEVRQCVDRYGEKLINCTALSFDYCDNADKIKMPQSGYMI 230


>12_02_0289 - 16914975-16916238,16916246-16916484
          Length = 500

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 133 NIEISYCRFCAESKSTDKLLNLQTDCQKHEEVLLKLAFLNAVYVDVSDK 279
           +IE+SYCRF A        LN+ T+     E+   L+  N    DV+DK
Sbjct: 380 DIEMSYCRFEAFKMLAKNYLNI-TEHSLFSEIEGLLSETNTTPADVADK 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,369,044
Number of Sequences: 37544
Number of extensions: 288102
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)