Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_B21
(1055 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 40 8e-04
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 38 0.002
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 38 0.002
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 36 0.010
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.010
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.029
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.12
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 32 0.16
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 31 0.27
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 3.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 3.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 39.5 bits (88), Expect = 8e-04
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = +1
Query: 700 PPPXPPXXPXPPPXXXXGGGPPPPPGXXXXXXXPXP 807
P P P P PPP GG PPPPP P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 35.5 bits (78), Expect = 0.013
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +1
Query: 700 PPPXP---PXXPXPPPXXXXGGGPPPPP 774
PPP P P PPP G GPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 30.3 bits (65), Expect = 0.48
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 617 PPPKXPGXPPXKPXXXPPXAFXXGPAXPPPXXP 715
PP G PP P PP GP PPP P
Sbjct: 753 PPAPIMGGPPPPPP--PPGVAGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.83
Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 12/53 (22%)
Frame = +2
Query: 614 SPPPKXPGX----PPXKPXXXPPXA-FXXGPAXPPPXX-------PPXXPXPP 736
SPPP P P P PP A GP PPP PP P PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 759 PAPPPGXXXGXTXALXPXXXIPXXVPPPSXPXPXPP 866
P PPP G P + PPP P P PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPP--PPPPPP 783
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Frame = +1
Query: 697 PPPPX-----PPXXPXPPPXXXXGG 756
PPPP PP P PPP GG
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGG 789
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/44 (45%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = -3
Query: 735 GGXGXXGGXXGGGXAGPXXXAXG----GXXXGXXGGXPGXFGGG 616
GG G GG GG GP G G G GG PG FGGG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 34.7 bits (76), Expect = 0.022
Identities = 23/65 (35%), Positives = 24/65 (36%)
Frame = -1
Query: 893 GGXXRGXXXRGXGXGXRRGGNRXGNXXXRGKGXXXXXXXPGGGGGPPPXXXXGGGXGXXG 714
GG G G G G+ G G G PGG GG P GGG G G
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP--GGFGGGLGGFG 255
Query: 713 GXGGG 699
G GG
Sbjct: 256 GGPGG 260
Score = 32.7 bits (71), Expect = 0.089
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -1
Query: 809 RGKGXXXXXXXPGGGGGPPPXXXXGGGXGXXGGXG 705
RG GG GGPPP GG G GG G
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217
Score = 30.7 bits (66), Expect = 0.36
Identities = 27/85 (31%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Frame = -3
Query: 858 GXGVXKGGEPXXEXXXKGXGXXXXXSXSRGG----GRAPXXXXXR-GGXGXXGGXXGGGX 694
G G GG P G G GG G P GG G G GGG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251
Query: 693 AGPXXXAXGGXXXGXXGGXPGXFGG 619
G G G GG PG GG
Sbjct: 252 GG------FGGGPGGFGGGPGGHGG 270
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -3
Query: 738 RGGXGXXGGXXGGGXAGPXXXAXGGXXXGXXGGXPGXFGG 619
RG G G GGG GP G G GG GG
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGG 222
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -1
Query: 836 GNRXGNXXXRGKGXXXXXXXPGGGGGPPPXXXXGGGXGXXGGXGGG 699
G+ G G G PGG GG G G GG GGG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Score = 26.6 bits (56), Expect = 5.9
Identities = 21/65 (32%), Positives = 21/65 (32%)
Frame = -1
Query: 893 GGXXRGXXXRGXGXGXRRGGNRXGNXXXRGKGXXXXXXXPGGGGGPPPXXXXGGGXGXXG 714
GG G G G G G G PGG G P GG G G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP-----GGFGGGPG 245
Query: 713 GXGGG 699
G GGG
Sbjct: 246 GFGGG 250
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 37.9 bits (84), Expect = 0.002
Identities = 23/66 (34%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Frame = +2
Query: 614 SPPPKXPGXPPXKPXXXPPXAFXXGPAXPPPXXPPXXP-XPPLXXXWXGARPPPRXXDXX 790
+PP P PP P PP PA PP PP P PPL A P P
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLPMGAPAAPP--LPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
Query: 791 XXXPXP 808
P P
Sbjct: 477 PPAPAP 482
Score = 31.9 bits (69), Expect = 0.16
Identities = 24/96 (25%), Positives = 25/96 (26%), Gaps = 4/96 (4%)
Frame = +2
Query: 617 PPPKXPGXPPXKPXXXPPXAFXXGPAXPPPXXPPXXPXPPLXXXWXGA----RPPPRXXD 784
PPP P PP P PP P PP PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 785 XXXXXPXPFXXXSXXGSPPFXTPXPXPXXXXPXPXP 892
P S +PP TP P P P
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Frame = +1
Query: 697 PPPPXPPXX----PXPPPXXXXGGGPPPPP 774
PPPP PP P P PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 28.3 bits (60), Expect = 1.9
Identities = 23/89 (25%), Positives = 26/89 (29%), Gaps = 5/89 (5%)
Frame = +2
Query: 614 SPPPKXPGXPPXKPXXXPPXA---FXXGPAXPPPXXP--PXXPXPPLXXXWXGARPPPRX 778
+PPP P P PP + P PPP P PPL + PP
Sbjct: 360 APPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPT 419
Query: 779 XDXXXXXPXPFXXXSXXGSPPFXTPXPXP 865
P S S P P P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Score = 27.5 bits (58), Expect = 3.4
Identities = 24/96 (25%), Positives = 27/96 (28%), Gaps = 3/96 (3%)
Frame = +2
Query: 614 SPPPKXPGXPPXKPXXXPPXAFXXGPAXPPPXXPPXXPXPPLXXXWXGARPPPRXXDXXX 793
+PP P P PP + PP PP P P + PP
Sbjct: 387 NPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP-PSAPPSLPPSAPPSLPMGAPA 445
Query: 794 XXPXPFXXXSXXGSP---PFXTPXPXPXXXXPXPXP 892
P P P P P P P P P P
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLP-PAAPAPPPAP 480
Score = 27.1 bits (57), Expect = 4.4
Identities = 27/101 (26%), Positives = 30/101 (29%), Gaps = 8/101 (7%)
Frame = +2
Query: 614 SPPPKXPGX-----PPX---KPXXXPPXAFXXGPAXPPPXXPPXXPXPPLXXXWXGARPP 769
+PPP PG PP PP P+ PP P P P P
Sbjct: 390 APPPAIPGRSAPALPPLGNASRTSTPPVPTP--PSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 770 PRXXDXXXXXPXPFXXXSXXGSPPFXTPXPXPXXXXPXPXP 892
P P P + PP P P P P P P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPP-AAPAPPP---APAPAP 484
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 35.9 bits (79), Expect = 0.010
Identities = 21/82 (25%), Positives = 25/82 (30%)
Frame = +2
Query: 620 PPKXPGXPPXKPXXXPPXAFXXGPAXPPPXXPPXXPXPPLXXXWXGARPPPRXXDXXXXX 799
PP P P + PP + P+ PPP P P + PPP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 800 PXPFXXXSXXGSPPFXTPXPXP 865
P P PP P P
Sbjct: 184 P-PSAPSLPSAVPPMPPKVPPP 204
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +2
Query: 617 PPPKXPGXPPXKPXXXPPXAFXXGPAXPPPXXPPXXPXPPL 739
PPP P P P P P+ PP PP P PPL
Sbjct: 172 PPPAQPAAPVKSPPSAPSL-----PSAVPP-MPPKVPPPPL 206
Score = 28.3 bits (60), Expect = 1.9
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Frame = +2
Query: 614 SPPPKXPGXPPXKPXXXPPXAFXXGP---AXPPPXXP-PXXPXPPLXXXWXGARPP 769
S PP+ P PP P PP P + PPP P PP A PP
Sbjct: 142 SAPPR-PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.9 bits (79), Expect = 0.010
Identities = 25/93 (26%), Positives = 28/93 (30%), Gaps = 1/93 (1%)
Frame = +2
Query: 617 PPPKXPGXPPX-KPXXXPPXAFXXGPAXPPPXXPPXXPXPPLXXXWXGARPPPRXXDXXX 793
P P G PP KP P P+ PP P PP+ G P P+
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPV--PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189
Query: 794 XXPXPFXXXSXXGSPPFXTPXPXPXXXXPXPXP 892
P P P P P P P P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 30.3 bits (65), Expect = 0.48
Identities = 23/94 (24%), Positives = 25/94 (26%)
Frame = +2
Query: 617 PPPKXPGXPPXKPXXXPPXAFXXGPAXPPPXXPPXXPXPPLXXXWXGARPPPRXXDXXXX 796
P P P P PP P+ P P PP+ A P P
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVP---KPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Query: 797 XPXPFXXXSXXGSPPFXTPXPXPXXXXPXPXPLS 898
P P P P P P P P S
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS 1214
Score = 29.9 bits (64), Expect = 0.63
Identities = 24/92 (26%), Positives = 27/92 (29%)
Frame = +2
Query: 617 PPPKXPGXPPXKPXXXPPXAFXXGPAXPPPXXPPXXPXPPLXXXWXGARPPPRXXDXXXX 796
P P P KP P P+ PP P PP+ GA P P+
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPV--PAPSGAPPVPKPSVAAPPVPVP-SGAPPVPKPSVAAPP 1151
Query: 797 XPXPFXXXSXXGSPPFXTPXPXPXXXXPXPXP 892
P P P P P P P P
Sbjct: 1152 VPAPSGAPPVPKPSVAAPPVPAPSSGIP-PVP 1182
Score = 29.9 bits (64), Expect = 0.63
Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 1/82 (1%)
Frame = +2
Query: 617 PPPKXP-GXPPXKPXXXPPXAFXXGPAXPPPXXPPXXPXPPLXXXWXGARPPPRXXDXXX 793
P PK G PP P P P+ P PP PP+ G P P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPV--PKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237
Query: 794 XXPXPFXXXSXXGSPPFXTPXP 859
P P +P P P
Sbjct: 1238 PVPAPSSEAPSVSTPRSSVPSP 1259
Score = 26.2 bits (55), Expect = 7.8
Identities = 25/93 (26%), Positives = 26/93 (27%), Gaps = 4/93 (4%)
Frame = +2
Query: 632 PGXPPXKPXXXPPXAFXXGPAXPPP-XXPPXXP-XPPLXXXWXG--ARPPPRXXDXXXXX 799
P PP P P P PP PP P P+ AR PP
Sbjct: 963 PAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAP 1022
Query: 800 PXPFXXXSXXGSPPFXTPXPXPXXXXPXPXPLS 898
P P P T P P P P S
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKS 1055
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 34.3 bits (75), Expect = 0.029
Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = +2
Query: 620 PPKXPGXPPXKPXXX-PPXAFXXGPAXPPPXXPPXXPXPPLXXXWXGARPPPRXXDXXXX 796
P PP +P PP P PP PP PP+ A PPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
Query: 797 XPXP 808
P P
Sbjct: 1743 VPNP 1746
Score = 32.3 bits (70), Expect = 0.12
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +2
Query: 614 SPPPKXPGXPPXKPXXXPPXAFXXGPAXPP-PXXPPXXPXPPLXXXWXGARPPP 772
+PP PP P PP P+ PP P PP P PPL + P P
Sbjct: 1698 APPQMSAPTPPPPPMSVPPP-----PSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.12
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 703 PPXPPXXPXPPPXXXXGGGPPPPP 774
PP P P PPP PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 31.5 bits (68), Expect = 0.21
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 700 PPPXPPXXPXPPPXXXXGGGPPPPP 774
PP PP P PP PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 697 PPPPXPPXXPXPPPXXXXGGGPPPPPG 777
PPPP PP PP PPPPPG
Sbjct: 9 PPPPPPPPGFEPPSQPP----PPPPPG 31
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 641 PPXKPXXXPPXAFXXGPAXPPPXXPP 718
PP P PP P+ PPP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.9 bits (69), Expect = 0.16
Identities = 23/66 (34%), Positives = 24/66 (36%)
Frame = -1
Query: 896 KGGXXRGXXXRGXGXGXRRGGNRXGNXXXRGKGXXXXXXXPGGGGGPPPXXXXGGGXGXX 717
+GG RG G RGG G RG G GG GG GG G
Sbjct: 8 RGGRGGSRGGRG-GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGA--RGGRGGSSGGR 64
Query: 716 GGXGGG 699
GG GG
Sbjct: 65 GGAKGG 70
Score = 31.1 bits (67), Expect = 0.27
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -3
Query: 858 GXGVXKGGEPXXEXXXKGXGXXXXXSXSRGGGRAPXXXXXRGGXGXXGGXXG--GGXAGP 685
G G +GG G G +RGGGR RGG G GG G GG +G
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGR--GGARGGGRG----GARGGRGGRGGARGGRGGSSGG 63
Query: 684 XXXAXGG 664
A GG
Sbjct: 64 RGGAKGG 70
Score = 29.5 bits (63), Expect = 0.83
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -1
Query: 836 GNRXGNXXXRGKGXXXXXXXPGGGGGPPPXXXXGGGXGXXGGXGG-GGXR 690
G+R G RG G GG GG GG G GG GG GG R
Sbjct: 6 GSRGGRGGSRG-GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGAR 54
Score = 29.1 bits (62), Expect = 1.1
Identities = 20/52 (38%), Positives = 20/52 (38%)
Frame = -3
Query: 774 RGGGRAPXXXXXRGGXGXXGGXXGGGXAGPXXXAXGGXXXGXXGGXPGXFGG 619
RGG R RGG G GGG G GG G GG G GG
Sbjct: 11 RGGSRG-----GRGGFNGGRGGFGGGRGGARGGGRGG-ARGGRGGRGGARGG 56
Score = 26.2 bits (55), Expect = 7.8
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = -3
Query: 774 RGGGRAPXXXXXRGGXGXXGGXXGG--GXAGPXXXAXGGXXXGXXGGXPGXFGG 619
RGG G G GG GG G G A GG G GG G GG
Sbjct: 18 RGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG-RGGSSGGRGGAKGG 70
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 31.1 bits (67), Expect = 0.27
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -3
Query: 738 RGGXGXXGGXXGGGXAGPXXXAXGGXXXGXXGGXPGXFGGG 616
RGG G G GG G + GG G GG G GG
Sbjct: 137 RGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
Score = 29.1 bits (62), Expect = 1.1
Identities = 21/65 (32%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Frame = -3
Query: 810 KGXGXXXXXSXSRGGGRAPXXXXXRGGXGXXGGXXGGGXAGP-XXXAXGGXXXGXXGGXP 634
KG RGG R G G G GGG G + GG G GG
Sbjct: 128 KGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSR 187
Query: 633 GXFGG 619
G F G
Sbjct: 188 GGFRG 192
Score = 27.1 bits (57), Expect = 4.4
Identities = 23/69 (33%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Frame = -1
Query: 890 GXXRGXXXRGXGXGXR--RGGNRXGNXXXRGKGXXXXXXXPGGGGGPPPXXXXGGGXGXX 717
G G RG G R RGG+R G +G G GGG GG G
Sbjct: 129 GARNGPAGRGGRGGFRGGRGGSR-GGFGGNSRGGFGGGSRGGFGGGS-----RGGSRGGF 182
Query: 716 GGXGGGGXR 690
G GG R
Sbjct: 183 RGGSRGGFR 191
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 951 APPPXPKRGXXXPPPXXXERGXGXG 877
APPP P R PPP + G G
Sbjct: 32 APPPAPSRVQQAPPPTAVQGGSSPG 56
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 448 GXPPFPXXHCPSPXLXPAXGRXXSRS 525
G PPFP + SP PA GR R+
Sbjct: 58 GPPPFPLFNSISPVYDPATGRLLYRN 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.151 0.562
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,223
Number of Sequences: 5004
Number of extensions: 29281
Number of successful extensions: 310
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 555217708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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