Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B19
         (1020 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical p...    30   3.0  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    30   3.0  
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical pr...    29   5.3  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      29   5.3  
AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen prot...    26   6.4  
U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter...    28   9.3  
U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter...    28   9.3  
L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.     28   9.3  

>U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical
           protein F25B5.7c protein.
          Length = 282

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
 Frame = -3

Query: 835 GGPPPGXPXPXPRXXXXXXXXXGXXVGGXRRPGGAXXXG--XXPGXXGXFXVP 683
           GGPPPG P   P          G   GG   PGG    G        G F VP
Sbjct: 99  GGPPPGMPGGVPPQAQPFNPHGGSMFGGPGGPGGPPPFGQPFQQAPQGMFNVP 151


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
 Frame = -3

Query: 835 GGPPPGXPXPXPRXXXXXXXXXGXXVGGXRRPGGAXXXG--XXPGXXGXFXVP 683
           GGPPPG P   P          G   GG   PGG    G        G F VP
Sbjct: 379 GGPPPGMPGGVPPQAQPFNPHGGSMFGGPGGPGGPPPFGQPFQQAPQGMFNVP 431


>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
           protein T13F2.3b protein.
          Length = 1076

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/57 (28%), Positives = 18/57 (31%)
 Frame = +3

Query: 708 PGXXPXXXAPPGRRXPPTXXXXXXXXXXXXRGXGXGXPGGGPPXXXXAPPHXXGXDP 878
           P   P    PPG   P T               G   PG GPP     P +  G +P
Sbjct: 263 PVPYPPGAYPPGMPGPMTPGYPAQAPAAPRTTPGSAGPGTGPPGTPQRPQYPQGTNP 319


>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
           protein T13F2.3a protein.
          Length = 1074

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/57 (28%), Positives = 18/57 (31%)
 Frame = +3

Query: 708 PGXXPXXXAPPGRRXPPTXXXXXXXXXXXXRGXGXGXPGGGPPXXXXAPPHXXGXDP 878
           P   P    PPG   P T               G   PG GPP     P +  G +P
Sbjct: 261 PVPYPPGAYPPGMPGPMTPGYPAQAPAAPRTTPGSAGPGTGPPGTPQRPQYPQGTNP 317


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 20/59 (33%), Positives = 20/59 (33%)
 Frame = +3

Query: 681 PGTXXXPXXPGXXPXXXAPPGRRXPPTXXXXXXXXXXXXRGXGXGXPGGGPPXXXXAPP 857
           PG    P  P   P    PPG R PP                  G PGG PP    APP
Sbjct: 774 PGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPG-PGGPPP--NMAPP 829


>Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical
           protein F02D10.1 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
 Frame = +3

Query: 651 TTGDPXGQXXPGTXXXPXXPG--XXPXXXAPPGRRXPPTXXXXXXXXXXXXRGXGXGXPG 824
           T G+P G    G+   P  PG    P    PPG    P              G   G   
Sbjct: 178 TPGEPGGPGPAGSPAGPSGPGPAGPPGPAGPPGNDGQPGQPGGPGQDGASSAGGEAGPGP 237

Query: 825 GGPP 836
            GPP
Sbjct: 238 AGPP 241


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 20/59 (33%), Positives = 20/59 (33%)
 Frame = +3

Query: 681 PGTXXXPXXPGXXPXXXAPPGRRXPPTXXXXXXXXXXXXRGXGXGXPGGGPPXXXXAPP 857
           PG    P  P   P    PPG R PP                  G PGG PP    APP
Sbjct: 774 PGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPG-PGGPPP--NMAPP 829


>AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen protein
           48 protein.
          Length = 285

 Score = 25.8 bits (54), Expect(2) = 6.4
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +3

Query: 657 GDPXGQXXPGTXXXPXXPGXXPXXXAPPG 743
           G P     PGT      PG  P    PPG
Sbjct: 95  GPPGPDGEPGTPGKDGEPGQGPGEPGPPG 123



 Score = 21.4 bits (43), Expect(2) = 6.4
 Identities = 13/46 (28%), Positives = 13/46 (28%)
 Frame = +3

Query: 732 APPGRRXPPTXXXXXXXXXXXXRGXGXGXPGGGPPXXXXAPPHXXG 869
           A PG   PP             R    G PG   P     PP   G
Sbjct: 143 AAPGLGGPPGPPGQDGIPGNPGRNGEDGAPGPQGPSGPPGPPGQPG 188


>U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform a protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 22/78 (28%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
 Frame = +3

Query: 645 RETTGDPXGQXXPGTXXXPXXPGXXPXXXAPPGRRXPPTXXXXXXXXXXXXRGXGXGXPG 824
           R ++G P     PG    P  PG  P    P  +   P             +G   G PG
Sbjct: 112 RGSSGTPGKPGLPGNAGKPGMPGTTPNQTCPLNQVREPPPCRPCPKGPPGIKGW-PGFPG 170

Query: 825 G-GPPXXXXAPPHXXGXD 875
             GPP     PP   G D
Sbjct: 171 DVGPP----GPPGLKGID 184


>U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform b protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 22/78 (28%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
 Frame = +3

Query: 645 RETTGDPXGQXXPGTXXXPXXPGXXPXXXAPPGRRXPPTXXXXXXXXXXXXRGXGXGXPG 824
           R ++G P     PG    P  PG  P    P  +   P             +G   G PG
Sbjct: 149 RGSSGTPGKPGLPGNAGKPGMPGTTPNQTCPLNQVREPPPCRPCPKGPPGIKGW-PGFPG 207

Query: 825 G-GPPXXXXAPPHXXGXD 875
             GPP     PP   G D
Sbjct: 208 DVGPP----GPPGLKGID 221


>L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 22/78 (28%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
 Frame = +3

Query: 645 RETTGDPXGQXXPGTXXXPXXPGXXPXXXAPPGRRXPPTXXXXXXXXXXXXRGXGXGXPG 824
           R ++G P     PG    P  PG  P    P  +   P             +G   G PG
Sbjct: 133 RGSSGTPGKPGLPGNAGKPGMPGTTPNQTCPLNQVREPPPCRPCPKGPPGIKGW-PGFPG 191

Query: 825 G-GPPXXXXAPPHXXGXD 875
             GPP     PP   G D
Sbjct: 192 DVGPP----GPPGLKGID 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,314,294
Number of Sequences: 27780
Number of extensions: 192563
Number of successful extensions: 705
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2688795166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)