Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_B18
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 52 9e-08
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 29 0.91
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 28 2.1
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 27 4.8
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 26 6.4
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 8.5
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 26 8.5
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 8.5
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 8.5
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 52.4 bits (120), Expect = 9e-08
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Frame = +2
Query: 80 CTGYLYDFPF-----LHESCNISVEDNC-VEPLYKHLVNIHHPTMCFIGVPYYVCAFSMF 241
CTGYLY PF L ++D V +Y+H+ I PT+ F+G+ +V F
Sbjct: 287 CTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTS 346
Query: 242 DLQVRYYIRSINGTFSLPSTEEMIAHWEEE 331
Q + R +G LPS EE + W++E
Sbjct: 347 QAQAAFLARVWSGRLKLPSKEEQL-KWQDE 375
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 870 HTLISXNXSIISYPVPMLAPFWRIFELLFSAESETLFQLLS 748
H I+ N S + P L+PFW++ L S+ LF +S
Sbjct: 413 HKAITKNPSFVFDPSYELSPFWKLDNLQEEKISDVLFSKIS 453
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 161 REAPRSCLPRIYYKTREEKGSRIGIQ 84
R AP++C+ R+ +K EK +G+Q
Sbjct: 342 RGAPKNCICRVSFKEFLEKNDNVGVQ 367
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 290 LPSTEEMIAHWEEEKKDRASRGYTKRQ 370
LP+ E H EEE+KD A R K +
Sbjct: 390 LPNVLEYYRHLEEEEKDEAERSKRKAE 416
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +2
Query: 653 IDASSRLTGCQNCV*LFVRYMEERGGKENRPCERS*KSVSLSALNNSSKILQNGASIGT 829
+ SSR T C C+ LF G C+R+ S L L G+SI +
Sbjct: 18 VSVSSRDTSCIPCIHLFFDSKRYVFGSVGEGCQRAILSQQLRLSKIKDVFLMQGSSISS 76
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -3
Query: 888 KKXLTQHTLISXNXSIISYPVPMLAPFWRIFELLFSAESETLFQLLSHGRFSFPP 724
KK T + N + ++ + +L P +RIF+ + ++ + +F LLS + P
Sbjct: 255 KKWSKSATDANGNSNQRAFNMFILDPIYRIFDAVMNSRKDEVFTLLSKLEVTIKP 309
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -2
Query: 367 SFRVSPRSSVFLLLLPVGDHLLSGRKT----KGPVNGTYVISDLQ 245
S R+SP S V LL LP DH +S + P + +Y+ S Q
Sbjct: 182 SDRLSPSSLVPLLKLPALDHAVSSSSSSDLPSDPNSASYIASSKQ 226
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 508 PTGRVQNHRRQHL*DCKRRR*INLLKLGCRQY*ALD 615
P+ ++Q+H +L DCKR + ++ L + C +Y +LD
Sbjct: 592 PSPQLQHHILNYLNDCKRLQDMDKL-IPCIEYQSLD 626
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -3
Query: 888 KKXLTQHTLISXNXSIISYPVPMLAPFWRIFELLFSAESETLFQLLSHGRFSFPP 724
KK T + N + ++ + +L P +RIF+ + ++ + +F LLS + P
Sbjct: 255 KKWSKSATDANGNSNQRAFNMFILDPIYRIFDAVMNSRKDEVFTLLSKLEVTIKP 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,600,072
Number of Sequences: 5004
Number of extensions: 75838
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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