Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_B18
(905 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71258-4|CAA95783.2| 423|Caenorhabditis elegans Hypothetical pr... 73 2e-13
U88314-9|AAF99881.1| 408|Caenorhabditis elegans Hypothetical pr... 71 9e-13
Z77663-14|CAB01214.2| 568|Caenorhabditis elegans Hypothetical p... 44 1e-04
AJ581300-1|CAE46113.1| 568|Caenorhabditis elegans flavin monoox... 44 1e-04
AL031633-22|CAB97238.1| 512|Caenorhabditis elegans Hypothetical... 35 0.070
AJ582072-1|CAE46542.1| 512|Caenorhabditis elegans flavin monoox... 35 0.070
Z70681-2|CAA94578.2| 203|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z81521-5|CAE17802.1| 657|Caenorhabditis elegans Hypothetical pr... 28 8.0
>Z71258-4|CAA95783.2| 423|Caenorhabditis elegans Hypothetical
protein C01H6.4 protein.
Length = 423
Score = 73.3 bits (172), Expect = 2e-13
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Frame = +2
Query: 77 LCTGYLYDFPFLHESC-NISVEDNCVEPLYKHLVNIHHPT-MCFIGVPYYVCAFSMFDLQ 250
+CTGY++ FPFL S + D V PLY+HL ++ +PT + FIG+P F +F++Q
Sbjct: 242 VCTGYVFKFPFLDSSLIQLKYNDRMVSPLYEHLCHVDYPTTLFFIGLPLGTITFPLFEVQ 301
Query: 251 VRYYIRSINGTFSLPSTEEMIAHWEEEKKDRASRGYTKRQAHMMGPDQEKYYASLATEAG 430
V+Y + I G LPS + I ++E+ R H++ +Q +Y LA G
Sbjct: 302 VKYALSLIAGKGKLPSDDVEIRNFEDA---RLQGLLNPASFHVIIEEQWEYMKKLAKMGG 358
>U88314-9|AAF99881.1| 408|Caenorhabditis elegans Hypothetical
protein C46H11.2 protein.
Length = 408
Score = 71.3 bits (167), Expect = 9e-13
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 5/165 (3%)
Frame = +2
Query: 77 LCTGYLYDFPFLHESCNISVEDN-CVEPLYKHLVNIHHP-TMCFIGVPYYVCAFSMFDLQ 250
+CTGY Y +PFL ++ E+N V P+++H+V+ +P ++ FIG+ F +F+ Q
Sbjct: 242 VCTGYFYKYPFLSDNILRVKENNQLVSPIFEHVVHAEYPNSLYFIGLNLVTITFPLFEYQ 301
Query: 251 VRYYIRSINGTFSLPSTEEMIAHWEEEKKDRASRGYTKRQAHMMGPDQEKYYASLATEAG 430
V+ + G +P + +I + + + + + SRG R H++ +Q +Y A +A
Sbjct: 302 VKMALSFATGRAPIPDRKMLIDYEKNQIEHQKSRGLAVRFYHLLQSEQWEYLARIAKLGN 361
Query: 431 TKSLPSVLT--KIREESSIRFLHNLKHYRQDVYKIIDDN-TYEIV 556
P + T I + N+ Y+ +K+ +D YE+V
Sbjct: 362 FDEWPYMKTIENITTYLQEKRKSNVIEYKNINFKLSEDGMDYEVV 406
>Z77663-14|CAB01214.2| 568|Caenorhabditis elegans Hypothetical
protein F53F4.5 protein.
Length = 568
Score = 44.4 bits (100), Expect = 1e-04
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Frame = +2
Query: 80 CTGYLYDFPFLHESCNISVEDNCVEPLYKHLVNIHHPTMCFIGVPYYVCAFS-MFDLQVR 256
CTGY + FPF+ +S + +++ V PLYK++ + ++ IG+ + + + + ++Q R
Sbjct: 316 CTGYTFGFPFV-DSDIVEIKNQQV-PLYKYVFPPNSDSVAVIGLIQPIGSIAPISEIQSR 373
Query: 257 YYIRSINGTFSLPSTEEMIAHWEEEKKDRASRGYTKRQAHMMGPDQEKYYASLATEAG 430
+ R G LPS++E I ++KK + Y H + D Y +A G
Sbjct: 374 WAARVFAGRCQLPSSQEQIDD-IQKKKAAMKKRYFDSIKHTIQVDYMSYMDEIAEIIG 430
>AJ581300-1|CAE46113.1| 568|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 568
Score = 44.4 bits (100), Expect = 1e-04
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Frame = +2
Query: 80 CTGYLYDFPFLHESCNISVEDNCVEPLYKHLVNIHHPTMCFIGVPYYVCAFS-MFDLQVR 256
CTGY + FPF+ +S + +++ V PLYK++ + ++ IG+ + + + + ++Q R
Sbjct: 316 CTGYTFGFPFV-DSDIVEIKNQQV-PLYKYVFPPNSDSVAVIGLIQPIGSIAPISEIQSR 373
Query: 257 YYIRSINGTFSLPSTEEMIAHWEEEKKDRASRGYTKRQAHMMGPDQEKYYASLATEAG 430
+ R G LPS++E I ++KK + Y H + D Y +A G
Sbjct: 374 WAARVFAGRCQLPSSQEQIDD-IQKKKAAMKKRYFDSIKHTIQVDYMSYMDEIAEIIG 430
>AL031633-22|CAB97238.1| 512|Caenorhabditis elegans Hypothetical
protein Y39A1A.19 protein.
Length = 512
Score = 35.1 bits (77), Expect = 0.070
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Frame = +2
Query: 77 LCTGYLYDFPFLHESCNISVEDNCVEPLYKHL---VNIHHPTMCFIGVPYYVCAFS-MFD 244
L TG+ + F + + V++N + +K++ T+ IG+ + + + +
Sbjct: 330 LATGFSFHFNLIENGNLVKVDENKTDA-FKYMFPMATADKNTLAVIGLVQVIGSIMPISE 388
Query: 245 LQVRYYIRSINGTFSLPSTEEMIAHWEEEKKDRASRGYTKRQAHMMGPDQEKYYASLATE 424
+Q R Y+ S LPS EEM + +++ A+R Y + + H + D Y L
Sbjct: 389 MQARVYLESFAAGRELPSKEEMFHNVIAKRQQMANR-YVESRRHTIQVDFLPYLHELGAL 447
Query: 425 AG 430
G
Sbjct: 448 IG 449
>AJ582072-1|CAE46542.1| 512|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 512
Score = 35.1 bits (77), Expect = 0.070
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Frame = +2
Query: 77 LCTGYLYDFPFLHESCNISVEDNCVEPLYKHL---VNIHHPTMCFIGVPYYVCAFS-MFD 244
L TG+ + F + + V++N + +K++ T+ IG+ + + + +
Sbjct: 330 LATGFSFHFNLIENGNLVKVDENKTDA-FKYMFPMATADKNTLAVIGLVQVIGSIMPISE 388
Query: 245 LQVRYYIRSINGTFSLPSTEEMIAHWEEEKKDRASRGYTKRQAHMMGPDQEKYYASLATE 424
+Q R Y+ S LPS EEM + +++ A+R Y + + H + D Y L
Sbjct: 389 MQARVYLESFAAGRELPSKEEMFHNVIAKRQQMANR-YVESRRHTIQVDFLPYLHELGAL 447
Query: 425 AG 430
G
Sbjct: 448 IG 449
>Z70681-2|CAA94578.2| 203|Caenorhabditis elegans Hypothetical
protein C30F2.2 protein.
Length = 203
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 210 CLTTCAHSPCLTCRSDITYVPL 275
C+ C HS CL C+S I PL
Sbjct: 25 CVGFCGHSICLKCQSKIVSCPL 46
>Z81521-5|CAE17802.1| 657|Caenorhabditis elegans Hypothetical
protein F32A11.7 protein.
Length = 657
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 287 SLPSTEEMIAHWEEEKKDRASRGYTKRQAHMMGPDQEKYYASLATEAGTKS-LPSVLTKI 463
S S EE++ HW + R+ ++ Q+K + ++EA T S S L K+
Sbjct: 2 STESGEELLEHWAVQGFSGVVAAIATRRLALVEDYQKKSHEKCSSEAETLSEHASCLLKL 61
Query: 464 REES-SIRFLHNLKHYRQDVYKIID 535
+++ R +H K + + + + ID
Sbjct: 62 EDDAHRNRLVHRRKLFSRKMRRRID 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,168,801
Number of Sequences: 27780
Number of extensions: 445206
Number of successful extensions: 1092
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -