Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B18
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    26   0.41 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   1.3  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   6.7  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   6.7  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 195 MVGWWMLTRCL*RGSTQLSSTDILQDS*RKGKSYRYPVHKKHYIDFIF 52
           M  W +L  CL      ++S  + ++S RK  +    +H+  Y+D+ F
Sbjct: 1   MTTWLLLVVCLGIACQGITSVTVRENSPRKLANSMNVIHEWKYLDYDF 48


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +2

Query: 143 NCVEPLYKHLVNIHHPTMCFIGVPYYVCAFSMFDLQVRYYIRSINGTFSLPSTEEMIAHW 322
           N +   YK L N  +  +C     +     S+F  Q    I   N  + L   +E+I+H+
Sbjct: 77  NKIHDAYKDL-NQRYGALCKEEALWNFPMISVFSRQDIETIIRRNSRYPLRPPQEVISHY 135

Query: 323 EEEKKDR 343
              ++DR
Sbjct: 136 RRTRRDR 142


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
 Frame = +2

Query: 323 EEEKKDRASRGYTKRQAHMMGP--DQEKYYASLATEAGTKSLPSVLTKIREESSIRFLHN 496
           E  KKDR        +  ++     +++Y  S   E  +        K RE S  R    
Sbjct: 233 EYRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKGRSRDR 292

Query: 497 LKHYRQDVYKIIDDNTYEIVN 559
            +  R    KII  N Y   N
Sbjct: 293 TERERSKETKIISSNNYNYKN 313


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
 Frame = +2

Query: 323 EEEKKDRASRGYTKRQAHMMGP--DQEKYYASLATEAGTKSLPSVLTKIREESSIRFLHN 496
           E  KKDR        +  ++     +++Y  S   E  +        K RE S  R    
Sbjct: 244 EYRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKGRSRDR 303

Query: 497 LKHYRQDVYKIIDDNTYEIVN 559
            +  R    KII  N Y   N
Sbjct: 304 TERERSKETKIISSNNYNYKN 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,334
Number of Sequences: 438
Number of extensions: 5518
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)