Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B16
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.15 |tfb5||transcription factor TFIIH complex subunit T...    37   0.004
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   4.6  

>SPBC32F12.15 |tfb5||transcription factor TFIIH complex subunit Tfb5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 68

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 15/60 (25%), Positives = 36/60 (60%)
 Frame = +1

Query: 196 ECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDDLMDQLSIPVHD 375
           ECDP +KQ +L++DE        +++++DE  L ++   +E ++A ++  +++ +  V +
Sbjct: 12  ECDPTVKQLILNMDEQ---SPGIVIEEIDEERLLVNESRLEQVKAELERRLEENTYQVEE 68


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -2

Query: 608 FFLVGFSLESANFGTFFDTTKSACGSS*KLSCSRASTAFLAXRFLATSSKTFLLSASLTL 429
           F++VG    S+  G+ F +  +   S      + AST+  +     T++ T   SA+ + 
Sbjct: 111 FYIVGGEGISSTTGSTFQSMTTFTSSQTNSGHASASTSIPSTAITVTANSTIYSSATSSF 170

Query: 428 PDSREV 411
           P S +V
Sbjct: 171 PYSTDV 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,911
Number of Sequences: 5004
Number of extensions: 60068
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)