Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B16
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0984 - 23131468-23131679,23132082-23132209,23132300-231323...    41   0.001
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126...    29   4.9  

>07_03_0984 -
           23131468-23131679,23132082-23132209,23132300-23132365,
           23134421-23134515,23135292-23135340,23135428-23135487,
           23135580-23135701,23135799-23135840,23135944-23135992,
           23136095-23136166,23136638-23136738,23136835-23136910,
           23137002-23137081,23137196-23137307,23137391-23137454,
           23137540-23137603,23138544-23138570
          Length = 472

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = +1

Query: 199 CDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQA 330
           CD  M QF+++L+ ++    KFIL  LD TH+F+   + E +++
Sbjct: 360 CDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRS 403


>01_07_0238 +
           42209407-42209964,42210039-42210561,42212577-42212665,
           42212981-42213191,42213265-42213446,42213573-42213812,
           42214691-42214878,42215230-42215323,42215407-42215463,
           42215552-42215686,42216460-42216525,42216745-42216858,
           42217849-42218010,42218093-42218221,42218323-42218424,
           42219428-42219504,42219600-42219957
          Length = 1094

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 156 VLGLVTLCINQL*IKCVGTYLLPTFSRYCSYAIAQQFKS*GFPIVXSVXE 7
           +L L+ +  ++  + C  T+LLP   +Y   A  QQF     P+  SV +
Sbjct: 407 ILSLIPIGFDEDRLTCSNTWLLPILDKYIYGASPQQFLERIVPLAESVQQ 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,652,608
Number of Sequences: 37544
Number of extensions: 367625
Number of successful extensions: 702
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)