Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_B16
(876 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC060317-1|AAH60317.1| 71|Homo sapiens general transcription f... 85 3e-16
BC056906-1|AAH56906.1| 71|Homo sapiens general transcription f... 85 3e-16
AL590703-3|CAH70241.1| 71|Homo sapiens protein ( Human DNA seq... 85 3e-16
AJ634743-1|CAG25512.1| 71|Homo sapiens TFIIH basal transcripti... 85 3e-16
U61837-1|AAB88578.1| 154|Homo sapiens putative cyclin G1 intera... 52 3e-06
CR456992-1|CAG33273.1| 154|Homo sapiens ZNHIT1 protein. 52 3e-06
BC017333-1|AAH17333.1| 154|Homo sapiens zinc finger, HIT type 1... 52 3e-06
AF093571-1|AAF03558.1| 154|Homo sapiens cyclin G1 binding prote... 52 3e-06
AC004876-6|AAD45833.1| 154|Homo sapiens putative cyclin G1 inte... 52 3e-06
AK128772-1|BAC87606.1| 834|Homo sapiens protein ( Homo sapiens ... 31 7.2
D86974-1|BAA13210.2| 884|Homo sapiens KIAA0220 protein. 30 9.6
AB209632-1|BAD92869.1| 854|Homo sapiens PI-3-kinase-related kin... 30 9.6
>BC060317-1|AAH60317.1| 71|Homo sapiens general transcription
factor IIH, polypeptide 5 protein.
Length = 71
Score = 85.0 bits (201), Expect = 3e-16
Identities = 37/61 (60%), Positives = 50/61 (81%)
Frame = +1
Query: 196 ECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDDLMDQLSIPVHD 375
ECDPAMKQFLL+LDE+ ALG+KFI+QD+D+TH+F+ A++V LQ RV +LMDQ + +
Sbjct: 11 ECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAFSLTQ 70
Query: 376 K 378
K
Sbjct: 71 K 71
>BC056906-1|AAH56906.1| 71|Homo sapiens general transcription
factor IIH, polypeptide 5 protein.
Length = 71
Score = 85.0 bits (201), Expect = 3e-16
Identities = 37/61 (60%), Positives = 50/61 (81%)
Frame = +1
Query: 196 ECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDDLMDQLSIPVHD 375
ECDPAMKQFLL+LDE+ ALG+KFI+QD+D+TH+F+ A++V LQ RV +LMDQ + +
Sbjct: 11 ECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAFSLTQ 70
Query: 376 K 378
K
Sbjct: 71 K 71
>AL590703-3|CAH70241.1| 71|Homo sapiens protein ( Human DNA
sequence from clone RP11-120J8 on chromosome 6 Contains
the 5' end of the gene for hypothetical protein
FLJ14917, a novel ).
Length = 71
Score = 85.0 bits (201), Expect = 3e-16
Identities = 37/61 (60%), Positives = 50/61 (81%)
Frame = +1
Query: 196 ECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDDLMDQLSIPVHD 375
ECDPAMKQFLL+LDE+ ALG+KFI+QD+D+TH+F+ A++V LQ RV +LMDQ + +
Sbjct: 11 ECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAFSLTQ 70
Query: 376 K 378
K
Sbjct: 71 K 71
>AJ634743-1|CAG25512.1| 71|Homo sapiens TFIIH basal transcription
factor complex TTDA subunit protein.
Length = 71
Score = 85.0 bits (201), Expect = 3e-16
Identities = 37/61 (60%), Positives = 50/61 (81%)
Frame = +1
Query: 196 ECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDDLMDQLSIPVHD 375
ECDPAMKQFLL+LDE+ ALG+KFI+QD+D+TH+F+ A++V LQ RV +LMDQ + +
Sbjct: 11 ECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAFSLTQ 70
Query: 376 K 378
K
Sbjct: 71 K 71
>U61837-1|AAB88578.1| 154|Homo sapiens putative cyclin G1
interacting protein protein.
Length = 154
Score = 52.0 bits (119), Expect = 3e-06
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +1
Query: 517 DNFHEDPHADL-VVSKKVPKFADSNEKPTRKKKSKSAEYYKMRXRKTFARLVXEDASFRS 693
DNF +DPHA L + K++P+F D + +KKK++ +++K+R RK F L+ E +
Sbjct: 38 DNFQDDPHAGLPQLGKRLPQFDDDADTGKKKKKTR-GDHFKLRFRKNFQALLEEQNLSVA 96
Query: 694 KPPNY 708
+ PNY
Sbjct: 97 EGPNY 101
>CR456992-1|CAG33273.1| 154|Homo sapiens ZNHIT1 protein.
Length = 154
Score = 52.0 bits (119), Expect = 3e-06
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +1
Query: 517 DNFHEDPHADL-VVSKKVPKFADSNEKPTRKKKSKSAEYYKMRXRKTFARLVXEDASFRS 693
DNF +DPHA L + K++P+F D + +KKK++ +++K+R RK F L+ E +
Sbjct: 38 DNFQDDPHAGLPQLGKRLPQFDDDADTGKKKKKTR-GDHFKLRFRKNFQALLEEQNLSVA 96
Query: 694 KPPNY 708
+ PNY
Sbjct: 97 EGPNY 101
>BC017333-1|AAH17333.1| 154|Homo sapiens zinc finger, HIT type 1
protein.
Length = 154
Score = 52.0 bits (119), Expect = 3e-06
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +1
Query: 517 DNFHEDPHADL-VVSKKVPKFADSNEKPTRKKKSKSAEYYKMRXRKTFARLVXEDASFRS 693
DNF +DPHA L + K++P+F D + +KKK++ +++K+R RK F L+ E +
Sbjct: 38 DNFQDDPHAGLPQLGKRLPQFDDDADTGKKKKKTR-GDHFKLRFRKNFQALLEEQNLSVA 96
Query: 694 KPPNY 708
+ PNY
Sbjct: 97 EGPNY 101
>AF093571-1|AAF03558.1| 154|Homo sapiens cyclin G1 binding protein
1 protein.
Length = 154
Score = 52.0 bits (119), Expect = 3e-06
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +1
Query: 517 DNFHEDPHADL-VVSKKVPKFADSNEKPTRKKKSKSAEYYKMRXRKTFARLVXEDASFRS 693
DNF +DPHA L + K++P+F D + +KKK++ +++K+R RK F L+ E +
Sbjct: 38 DNFQDDPHAGLPQLGKRLPQFDDDADTGKKKKKTR-GDHFKLRFRKNFQALLEEQNLSVA 96
Query: 694 KPPNY 708
+ PNY
Sbjct: 97 EGPNY 101
>AC004876-6|AAD45833.1| 154|Homo sapiens putative cyclin G1
interacting protein protein.
Length = 154
Score = 52.0 bits (119), Expect = 3e-06
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +1
Query: 517 DNFHEDPHADL-VVSKKVPKFADSNEKPTRKKKSKSAEYYKMRXRKTFARLVXEDASFRS 693
DNF +DPHA L + K++P+F D + +KKK++ +++K+R RK F L+ E +
Sbjct: 38 DNFQDDPHAGLPQLGKRLPQFDDDADTGKKKKKTR-GDHFKLRFRKNFQALLEEQNLSVA 96
Query: 694 KPPNY 708
+ PNY
Sbjct: 97 EGPNY 101
>AK128772-1|BAC87606.1| 834|Homo sapiens protein ( Homo sapiens
cDNA FLJ45371 fis, clone BRHIP3017855, highly similar
to Homo sapiens nuclear pore complex interacting protein
(NPIP). ).
Length = 834
Score = 30.7 bits (66), Expect = 7.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 565 PSLTQLNLHVGLHESYLVLGPQLLFSLXVFSPHHPKPFFSRHL 437
PS++ L H LH +++ LL S+ F HH SRHL
Sbjct: 373 PSVSSLPFHPQLHSQQMIISRYLL-SVCGFRFHHQPMIISRHL 414
>D86974-1|BAA13210.2| 884|Homo sapiens KIAA0220 protein.
Length = 884
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 565 PSLTQLNLHVGLHESYLVLGPQLLFSLXVFSPHHPKPFFSRHL 437
PS++ L H LH +++ LL S+ F HH SRHL
Sbjct: 423 PSVSSLPFHPQLHPQQMIISRYLL-SVCGFRFHHQPMIISRHL 464
>AB209632-1|BAD92869.1| 854|Homo sapiens PI-3-kinase-related kinase
SMG-1 isoform 1homolog protein.
Length = 854
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 565 PSLTQLNLHVGLHESYLVLGPQLLFSLXVFSPHHPKPFFSRHL 437
PS++ L H LH +++ LL S+ F HH SRHL
Sbjct: 393 PSVSSLPFHPQLHPQQMIISRYLL-SVCGFRFHHQPMIISRHL 434
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,576,927
Number of Sequences: 237096
Number of extensions: 2143089
Number of successful extensions: 3612
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3607
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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