Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B16
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024819-2|AAF59588.1|   71|Caenorhabditis elegans Hypothetical ...    64   9e-11
Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AF036689-3|AAB88322.2|  557|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     29   4.4  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    29   4.4  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    29   4.4  

>AC024819-2|AAF59588.1|   71|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.2 protein.
          Length = 71

 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 27/59 (45%), Positives = 43/59 (72%)
 Frame = +1

Query: 202 DPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDDLMDQLSIPVHDK 378
           DPA +Q L+HLD++  LG KFI+++LD+THLFI  +IV  L+ +V+ +M+ ++    DK
Sbjct: 13  DPAFRQLLIHLDDSRQLGSKFIVRELDDTHLFIEKEIVPMLENKVEQIMENMNPEAVDK 71


>Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical
           protein C11G6.1 protein.
          Length = 643

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 514 QDNFHEDPHADLVVSKKVPKFADSNEKPTRKKKSKSAEYYK 636
           +D F E P + +     +    D  +KP ++K+ KS+E YK
Sbjct: 552 EDQFPEGPSSSVAADTTLEFGEDQEKKPKKEKRDKSSEEYK 592


>Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical
           protein ZK822.1 protein.
          Length = 913

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 27/88 (30%), Positives = 39/88 (44%)
 Frame = +2

Query: 419 ANLEESKMPREERFWMMWRENVEREKQLRP*NKITFMKTHMQI*LCQRRCRNSQTLMRNQ 598
           A +EE KM R  R     RE  +++ +L+        K  MQ+    RRC  S+ L R  
Sbjct: 347 AEIEEMKM-RNNRLVEQLREKSQQQSKLQ----CQLHKAEMQVNALSRRCALSEALDRLT 401

Query: 599 LGRRSLKALNIIRCDXGKRLRGWXKRMQ 682
           L  R  K+         +RLR +  +MQ
Sbjct: 402 LDERMEKSATSWIKKIEERLRIFENQMQ 429


>AF036689-3|AAB88322.2|  557|Caenorhabditis elegans Hypothetical
           protein C50A2.2 protein.
          Length = 557

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 550 VVSKKVPKFADSNEKPTRKKKSKSAEYYKMRXRKT 654
           + +KKVP+ +   +    KKKSK A +Y+ +  KT
Sbjct: 159 LTNKKVPRRSQFTDPDAPKKKSKGARHYRDQNLKT 193


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 517 DNFHEDPHADLVVSKKVPKFADSNEKPTRKKKS 615
           DN ++DPH  L+     P F D N+     +K+
Sbjct: 131 DNVYQDPHQHLMHIHSAPNFHDENQNAANFRKT 163


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 517 DNFHEDPHADLVVSKKVPKFADSNEKPTRKKKS 615
           DN ++DPH  L+     P F D N+     +K+
Sbjct: 117 DNVYQDPHQHLMHIHSAPNFHDENQNAANFRKT 149


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 517 DNFHEDPHADLVVSKKVPKFADSNEKPTRKKKS 615
           DN ++DPH  L+     P F D N+     +K+
Sbjct: 117 DNVYQDPHQHLMHIHSAPNFHDENQNAANFRKT 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,267,118
Number of Sequences: 27780
Number of extensions: 339122
Number of successful extensions: 737
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)