Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B15
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    28   1.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   1.5  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 412 SIHSCSNFYGLQHLTNTRWTVSSFTHLR 329
           SI    +FY +Q LT  RWT+ S T L+
Sbjct: 346 SIFDYEHFYLVQLLTKNRWTIVSCTMLK 373


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 92  VRFKCFKIYILKL-LIPNTTFQYVIIIKYGSIATITTRFTKRTNN 223
           V F+CFK +  K  +IP+      + + YG +  +   F+K   N
Sbjct: 331 VCFECFKAFFFKKSMIPSVLASLNVSVSYGLMMNLVRDFSKNLEN 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,618
Number of Sequences: 5004
Number of extensions: 63111
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)