Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_B13
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc... 54 3e-08
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.84
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 29 1.1
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 28 1.5
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 28 1.5
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 2.6
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 2.6
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 2.6
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 2.6
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 2.6
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 2.6
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 2.6
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 2.6
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 2.6
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 2.6
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 27 2.6
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 2.6
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 27 3.4
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 27 4.5
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 5.9
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.8
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 26 7.8
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 26 7.8
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 7.8
>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
Sen34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 53.6 bits (123), Expect = 3e-08
Identities = 38/104 (36%), Positives = 55/104 (52%)
Frame = +3
Query: 189 ILRTHHRICSAFVGSVPSFPRQNDFLGLPIALSSEETALLVEKRICEIHEMPAEFCKYEP 368
+ R ++ I VG++P P+QN FLGLP+ LS EE L+EK I I +
Sbjct: 25 VFRKNYHILGTLVGTLPQLPQQNVFLGLPMELSKEEAFYLIEKGISYI---------VDD 75
Query: 369 TEKDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVAGKKK 500
T+ K+L+E K ++Q LKKR+ S D ++A KKK
Sbjct: 76 TKVHKQLLENTTKDDVKQ---CLKKRQ----SLAYDQMIAAKKK 112
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.1 bits (62), Expect = 0.84
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Frame = +3
Query: 312 EKRICEIHEMPAEFCKYEPTEKDKELMEE------FLKKVLEQQASALKKRKIEQLSQKI 473
EKR+ E+ E E + + EK+++ EE +L K ++Q AL +R+++Q+ +
Sbjct: 278 EKRLAEVEEARKEEARLKKKEKERKKKEEMKAQGKYLSKKQKEQ-QALAQRRLQQMLES- 335
Query: 474 DIIVAG 491
+ VAG
Sbjct: 336 GVRVAG 341
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/46 (26%), Positives = 30/46 (65%)
Frame = +3
Query: 375 KDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVAGKKKNLIN 512
+D L + +++ VL+++ ALK +++ + + + V+GKK +L++
Sbjct: 553 EDDRLKQLYIEGVLDKEIKALKVSQLKDILRDRGLRVSGKKADLLD 598
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 363 EPTEKDKELMEEFLKKVLEQQASALKK 443
E EKD ++ EF+++ +EQ S+L+K
Sbjct: 255 EKAEKDADIYSEFIQQYMEQLESSLEK 281
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -1
Query: 104 SIFLTCVKAFEKTNLSRCDLKFLR--IPYSES 15
S F++C++ +E NLS + FLR PYS+S
Sbjct: 45 SYFISCLRKWEDLNLSTHYVNFLRSVTPYSQS 76
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 595 LKDKSSGAFMLSNALVFGSQAGTNYSNEMRT 687
++D +SG F +SN +FGS GT N +T
Sbjct: 361 IEDMASGTFTISNGGIFGSLYGTPIINLPQT 391
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 303 LLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLE 419
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 303 LLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLE 419
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 303 LLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLE 419
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 303 LLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLE 419
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 303 LLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLE 419
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 303 LLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLE 419
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 303 LLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLE 419
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 303 LLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLE 419
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 303 LLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLE 419
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 303 LLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLE 419
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 295 SSEDNAIGSPKKSFCLGNEGTEPTNAE 215
SS D+ SPKK +GN+G +P +
Sbjct: 330 SSSDSEFSSPKKKKKVGNQGKKPLGTD 356
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 303 LLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLE 419
L++ + CE H+ +F Y +EK +E + KVL+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ 632
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 408 KVLEQQASALKKRKIEQLSQKIDIIVAGKKKNLINKGMS 524
+V ++ S K+ K+ +L +K+D KKKN + G S
Sbjct: 11 EVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSS 49
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 237 PSFPRQNDFLGLPIALSSEETALLVEKRICEIHE 338
P P ++D G P+ S++ A + KR+ HE
Sbjct: 148 PKVPMKDDVTGEPLIQRSDDNADALRKRLVTYHE 181
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 595 GHCKPIIYIMTISEATFHKSIYLPD 521
G+ K +IY T+ +F + YLPD
Sbjct: 160 GNFKQVIYSPTVYNGSFKRLFYLPD 184
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/79 (21%), Positives = 34/79 (43%)
Frame = -2
Query: 490 PATMISIFCDNCSILRFFNADACCSSTFFKNSSINSLSFSVGSYLQNSAGIS*ISHILFS 311
P ++ F S+ + D F + S++ +LQ+ +G I++IL +
Sbjct: 24 PLLLLGSFSSVASVSLKRSGDLLLFERFTLPARTRSVALLSSHFLQSESGRHSIANILIA 83
Query: 310 TNNAVSSEDNAIGSPKKSF 254
T N + +P+K+F
Sbjct: 84 TENGKCYLLQLVKTPEKAF 102
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -2
Query: 586 KPIIYIMTISEATF--HKSIYLPDI 518
KP+IY++ +SE F K+ YLP I
Sbjct: 225 KPVIYLVNMSERDFLRQKNKYLPKI 249
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.8 bits (54), Expect = 7.8
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -2
Query: 484 TMISIFCD-NCSILRFFNADACCSSTFFKNSSINSLSFSVGSYLQNSA-GIS*ISHILFS 311
T +S CD NCS+ F N S + + I F G +NSA G+S S F
Sbjct: 297 TGLSSTCDVNCSLQNFANYQDFYFSKGYNSYQIEIQMFGNGEATENSAFGLS--SLQFFE 354
Query: 310 TNNAVSSEDN 281
TN +D+
Sbjct: 355 TNQNSYFDDS 364
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 244 FQGKMISWGFRLHYLLKKQHYWLKRGYVKFTKCQLNFVN 360
F K+ FR Y + Q LKRGYV+ K + +N
Sbjct: 700 FPNKLFYTEFRARYGILSQS--LKRGYVEAKKATITIIN 736
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,759
Number of Sequences: 5004
Number of extensions: 69802
Number of successful extensions: 255
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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