Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_B13
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 37 0.023
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 33 0.29
09_01_0078 - 1131973-1132248 30 2.0
01_01_0100 - 755894-756662,757086-757598,758718-761050 30 2.0
08_01_0530 - 4593665-4594006,4594169-4594285,4594417-4594504,459... 30 2.7
02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196 29 3.6
07_03_1233 + 25057139-25057262,25058340-25058911 29 4.7
02_03_0338 + 17905341-17906002,17906214-17906499,17907975-17908640 29 6.2
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377... 29 6.2
>09_06_0076 +
20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 36.7 bits (81), Expect = 0.023
Identities = 19/68 (27%), Positives = 40/68 (58%)
Frame = +3
Query: 249 RQNDFLGLPIALSSEETALLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLEQQA 428
+ ++F+ PI+L+ ++ +EK IC+ E+ AE K E +++KE E + +V +
Sbjct: 433 KNSEFISYPISLNEKK----IEKEICDDEEVDAEEGKVEDVDEEKEKKGEKINEVSHEWH 488
Query: 429 SALKKRKI 452
S+ K++ +
Sbjct: 489 SSNKQKPL 496
>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 33.1 bits (72), Expect = 0.29
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = +3
Query: 366 PTEKDKELMEEFLKKVLEQQASALKKR----KIEQLSQKIDIIVAGKKKN 503
P K++++M+E L ++LE+ KR KI+Q+ +K D I A ++K+
Sbjct: 1019 PMNKEEKMMDEALDQILEKLEQMKTKRRCNEKIDQILEKFDEIEANRRKS 1068
>09_01_0078 - 1131973-1132248
Length = 91
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +3
Query: 291 EETALLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLEQQASALKKRKIEQLSQK 470
E+T + I E+HE+PAE EPT +D + E +K E+Q ++ E+L +
Sbjct: 2 EDTPIKNSMPIVEMHEVPAE---AEPTVED--MQEALFQKQKEEQLQLQLFQQEEELEDQ 56
Query: 471 IDIIVAGKKKNLINKGMSGR*MLL 542
+V NL++ + +L+
Sbjct: 57 QPQVVRSLSFNLMHSFLDDHPILM 80
>01_01_0100 - 755894-756662,757086-757598,758718-761050
Length = 1204
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 291 EETALLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLEQQASALKKRKIEQ 458
E+ L++ K+ EI + F +E E L E KK+LE + K+K++Q
Sbjct: 952 EQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIAKKILEFPDAMNDKKKLQQ 1007
>08_01_0530 -
4593665-4594006,4594169-4594285,4594417-4594504,
4594929-4595006,4595914-4595927,4595993-4596075,
4596359-4596407,4596535-4596658,4596936-4597021,
4597232-4597360,4597465-4597587,4597699-4597908
Length = 480
Score = 29.9 bits (64), Expect = 2.7
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Frame = +3
Query: 78 GFHASQKNTHQRSDSTIMIPIYVEKGIGYLWN-------SEHWYILRTHHRICSAFVGSV 236
GFH+ +K ++ + + I I L + HW L HH I S ++
Sbjct: 249 GFHSERKKNPEKFKNQLTNQILNYSNIAQLASVKIMKRAGSHWQELNIHHSIRSIVCLNL 308
Query: 237 PSFPRQNDFLGLPIALSSEE---TALLVEKRICEI 332
PSF + G P EE TA V+ R+ E+
Sbjct: 309 PSFSGGLNPWGTPGTRKVEERELTAPFVDDRLIEV 343
>02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196
Length = 933
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 291 EETALLVEKRICEIHEMPAEFCKYEPTEKDKELMEEFLKKVLEQQASALKKRKIEQ 458
E+ L++ K+ EI + F +E E L E KK+L+ + K+K++Q
Sbjct: 530 EQNGLILSKKKMEICKEKVNFLGHEIGEGKIHLQEHIAKKILQFPDAMNDKKKLQQ 585
>07_03_1233 + 25057139-25057262,25058340-25058911
Length = 231
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 825 AGGGAYPCTLXRGPITNNYVNY 760
A G++PCTL RGP + ++ Y
Sbjct: 137 AADGSWPCTLCRGPFQHGHLAY 158
>02_03_0338 + 17905341-17906002,17906214-17906499,17907975-17908640
Length = 537
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 325 HILFSTNNAVSSEDNAIGSPKKSFCLGNEGTEPTNAEHIRW*VRKIY 185
H+L T N +S G KK EG+ PT AE RW + +I+
Sbjct: 186 HMLMVTLNVISRM--VFG--KKYIVEEGEGSSPTTAEEFRWMIEEIF 228
>01_05_0619 -
23737178-23737378,23737460-23737516,23737597-23737755,
23739477-23739621,23739725-23740136,23740693-23740855
Length = 378
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 363 EPTEKDKELMEEFLKKVLEQQASALKKRKIEQLSQKID 476
E +DKE+ E +KVLE++ AL K+E+ +D
Sbjct: 234 EKEPEDKEMTLEEYEKVLEEKRKALLSLKVEERKVVVD 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,611,185
Number of Sequences: 37544
Number of extensions: 384757
Number of successful extensions: 954
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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