Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_B13
(851 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 37 0.016
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 37 0.016
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 37 0.016
Z73906-4|CAA98117.1| 508|Caenorhabditis elegans Hypothetical pr... 35 0.084
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 31 0.79
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 31 0.79
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 31 0.79
Z98877-10|CAB63406.1| 314|Caenorhabditis elegans Hypothetical p... 30 2.4
AC024824-2|AAK85502.1| 740|Caenorhabditis elegans Hypothetical ... 30 2.4
Z81525-3|CAB04258.1| 467|Caenorhabditis elegans Hypothetical pr... 29 3.2
L23651-13|AAA27957.3| 251|Caenorhabditis elegans Hypothetical p... 29 5.5
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical pr... 28 9.7
AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical... 28 9.7
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 37.1 bits (82), Expect = 0.016
Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 2/143 (1%)
Frame = +3
Query: 75 KGFHASQKNTHQRSDSTIMIPIYVEKGIGYLWNSEHWYILRTHHRICSAFVGSVPSF-PR 251
KG+++ +R + TIM + + + W+ + Y + ++ G P F
Sbjct: 1712 KGYNSRANGAVERFNKTIMHIMKKKTAVPMEWDDQVVYAVYAYNNCVHENTGETPMFLMH 1771
Query: 252 QNDFLGLPIALSSEETALLVEKRICEI-HEMPAEFCKYEPTEKDKELMEEFLKKVLEQQA 428
D +G P+ +S E+ + + E H + E K + K+ + E+ K L Q
Sbjct: 1772 GRDVMG-PLEMSGEDAVGINYADMDEYKHLLTQELLKVQKIAKEHAMREQESYKSLFDQK 1830
Query: 429 SALKKRKIEQLSQKIDIIVAGKK 497
A KK + Q ++ + + +K
Sbjct: 1831 YASKKHRFPQPGSRVLLEIPSEK 1853
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 37.1 bits (82), Expect = 0.016
Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 2/143 (1%)
Frame = +3
Query: 75 KGFHASQKNTHQRSDSTIMIPIYVEKGIGYLWNSEHWYILRTHHRICSAFVGSVPSF-PR 251
KG+++ +R + TIM + + + W+ + Y + ++ G P F
Sbjct: 1615 KGYNSRANGAVERFNKTIMHIMKKKTAVPMEWDDQVVYAVYAYNNCVHENTGETPMFLMH 1674
Query: 252 QNDFLGLPIALSSEETALLVEKRICEI-HEMPAEFCKYEPTEKDKELMEEFLKKVLEQQA 428
D +G P+ +S E+ + + E H + E K + K+ + E+ K L Q
Sbjct: 1675 GRDVMG-PLEMSGEDAVGINYADMDEYKHLLTQELLKVQKIAKEHAMREQESYKSLFDQK 1733
Query: 429 SALKKRKIEQLSQKIDIIVAGKK 497
A KK + Q ++ + + +K
Sbjct: 1734 YASKKHRFPQPGSRVLLEIPSEK 1756
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 37.1 bits (82), Expect = 0.016
Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 2/143 (1%)
Frame = +3
Query: 75 KGFHASQKNTHQRSDSTIMIPIYVEKGIGYLWNSEHWYILRTHHRICSAFVGSVPSF-PR 251
KG+++ +R + TIM + + + W+ + Y + ++ G P F
Sbjct: 1626 KGYNSRANGAVERFNKTIMHIMKKKTAVPMEWDDQVVYAVYAYNNCVHENTGETPMFLMH 1685
Query: 252 QNDFLGLPIALSSEETALLVEKRICEI-HEMPAEFCKYEPTEKDKELMEEFLKKVLEQQA 428
D +G P+ +S E+ + + E H + E K + K+ + E+ K L Q
Sbjct: 1686 GRDVMG-PLEMSGEDAVGINYADMDEYKHLLTQELLKVQKIAKEHAMREQESYKSLFDQK 1744
Query: 429 SALKKRKIEQLSQKIDIIVAGKK 497
A KK + Q ++ + + +K
Sbjct: 1745 YASKKHRFPQPGSRVLLEIPSEK 1767
>Z73906-4|CAA98117.1| 508|Caenorhabditis elegans Hypothetical
protein D2030.3 protein.
Length = 508
Score = 34.7 bits (76), Expect = 0.084
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +3
Query: 327 EIHEMPAEFCKYEPTEKDKELMEEFLKKVLEQ--QASALKKRKIEQLSQKIDIIVAGKKK 500
E E+ EF + E +K++E++ ++K +E+ +AS+ KK+ E + + KKK
Sbjct: 422 EKEEVEQEFEEMETEDKEEEIVPVVVEKKIEEVPEASSRKKKNSESSTTATSTVAKKKKK 481
Query: 501 NLIN 512
+++N
Sbjct: 482 SVVN 485
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 31.5 bits (68), Expect = 0.79
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 312 EKRICEIHEMPAEF-CKYEPTEKDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVA 488
+K E ++ AE K EK K E LKK E +A+ +K K EQL K+D A
Sbjct: 9810 QKETDEKQKLEAEITAKKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQL--KLDTEAA 9867
Query: 489 GKK 497
KK
Sbjct: 9868 SKK 9870
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 372 EKDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVAGKKKNLINK 515
EKD +L +E K+ ++ + LKK K ++L Q+ D + +K + + +
Sbjct: 7740 EKDDKLKQEKNDKLKQEADAKLKKEKDDKLKQEADAKLKKEKDDKLKQ 7787
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 31.5 bits (68), Expect = 0.79
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 312 EKRICEIHEMPAEF-CKYEPTEKDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVA 488
+K E ++ AE K EK K E LKK E +A+ +K K EQL K+D A
Sbjct: 9830 QKETDEKQKLEAEITAKKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQL--KLDTEAA 9887
Query: 489 GKK 497
KK
Sbjct: 9888 SKK 9890
Score = 31.5 bits (68), Expect = 0.79
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 312 EKRICEIHEMPAEF-CKYEPTEKDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVA 488
+K E ++ AE K EK K E LKK E +A+ +K K EQL K+D A
Sbjct: 13463 QKETDEKQKLEAEITAKKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQL--KLDTEAA 13520
Query: 489 GKK 497
KK
Sbjct: 13521 SKK 13523
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 372 EKDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVAGKKKNLINK 515
EKD +L +E K+ ++ + LKK K ++L Q+ D + +K + + +
Sbjct: 7760 EKDDKLKQEKNDKLKQEADAKLKKEKDDKLKQEADAKLKKEKDDKLKQ 7807
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 288 SEETALLVEKRICEIHEMPAEFCKYEPTEKDKELMEEF-LKKVLEQQASALKKRKIEQLS 464
SE+ A EK + + ++ +E + + +L E+ KK E +A+ +K K EQL
Sbjct: 13247 SEDDAARKEKELNDKLKLESEIATKKASADKLKLEEQAQAKKAAEVEAAKKQKEKDEQL- 13305
Query: 465 QKIDIIVAGKK 497
K+D A KK
Sbjct: 13306 -KLDTEAASKK 13315
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 31.5 bits (68), Expect = 0.79
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 312 EKRICEIHEMPAEF-CKYEPTEKDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVA 488
+K E ++ AE K EK K E LKK E +A+ +K K EQL K+D A
Sbjct: 9830 QKETDEKQKLEAEITAKKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQL--KLDTEAA 9887
Query: 489 GKK 497
KK
Sbjct: 9888 SKK 9890
Score = 31.5 bits (68), Expect = 0.79
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 312 EKRICEIHEMPAEF-CKYEPTEKDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVA 488
+K E ++ AE K EK K E LKK E +A+ +K K EQL K+D A
Sbjct: 13463 QKETDEKQKLEAEITAKKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQL--KLDTEAA 13520
Query: 489 GKK 497
KK
Sbjct: 13521 SKK 13523
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 372 EKDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVAGKKKNLINK 515
EKD +L +E K+ ++ + LKK K ++L Q+ D + +K + + +
Sbjct: 7760 EKDDKLKQEKNDKLKQEADAKLKKEKDDKLKQEADAKLKKEKDDKLKQ 7807
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 288 SEETALLVEKRICEIHEMPAEFCKYEPTEKDKELMEEF-LKKVLEQQASALKKRKIEQLS 464
SE+ A EK + + ++ +E + + +L E+ KK E +A+ +K K EQL
Sbjct: 13247 SEDDAARKEKELNDKLKLESEIATKKASADKLKLEEQAQAKKAAEVEAAKKQKEKDEQL- 13305
Query: 465 QKIDIIVAGKK 497
K+D A KK
Sbjct: 13306 -KLDTEAASKK 13315
>Z98877-10|CAB63406.1| 314|Caenorhabditis elegans Hypothetical
protein Y69H2.9 protein.
Length = 314
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2
Query: 551 CFRYCHYINNRLTV 592
C RY HYINNRLT+
Sbjct: 152 CRRYYHYINNRLTI 165
>AC024824-2|AAK85502.1| 740|Caenorhabditis elegans Hypothetical
protein Y55B1BR.2 protein.
Length = 740
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -2
Query: 325 HILFSTNNAVSSEDNAIGSPKKSFCLGNEGTEPTNAEHIRW*VRKIYQCSEFHK*P-IPF 149
H+ TN AV+S A G+PK S G+ + PT A I W + I C P I +
Sbjct: 561 HLTVPTNKAVTSV--AHGTPKPSPSAGSTPSGPTGAPVIPW-IASIQACQNMVSMPQIVY 617
Query: 148 STY 140
Y
Sbjct: 618 DAY 620
>Z81525-3|CAB04258.1| 467|Caenorhabditis elegans Hypothetical
protein F33A8.4 protein.
Length = 467
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 324 CEIHEMPAEFCKYEPTEKDKELMEEFLKKVLEQQASALKKRKIEQL 461
C I+ AEFC ++ T +KE E +K+ +E + A KK+K +++
Sbjct: 106 CAIYRNQAEFCDFKLT-FNKETGEIEVKEAVEGEEDAEKKKKKKKI 150
>L23651-13|AAA27957.3| 251|Caenorhabditis elegans Hypothetical
protein C29E4.8 protein.
Length = 251
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 237 PSFPRQNDFLGLPIALSSEETALLVEKRICEIHEMPAEFCKY 362
P P ++D G P+ S++ + KR+ + H+M Y
Sbjct: 170 PKVPMKDDLTGEPLIRRSDDNEETLRKRLVQYHQMTVPLVDY 211
>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
F33H2.5 protein.
Length = 2144
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 177 PSSTNNQFLFQRISVS*LLNHFFDEYFF 94
PSS NQ +Q++ +L H+F+ +FF
Sbjct: 1559 PSSLLNQIDWQKVVARRVLQHYFNSFFF 1586
>Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical
protein T05D4.5 protein.
Length = 482
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Frame = +3
Query: 372 EKDKELME-EFLKKVL-----EQQASALKKRKIEQLSQKIDIIVAGK 494
E+D++ ++++KVL E A LK K+E+L +KID I A K
Sbjct: 246 EEDRDQFHFQYMRKVLKTDEAESFAKKLKAEKVERLDKKIDEIKARK 292
>AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical
protein Y73F8A.20 protein.
Length = 541
Score = 27.9 bits (59), Expect = 9.7
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Frame = +3
Query: 75 KGFHASQKNTHQRSDSTIMIPIYVEKGIGYLW--NSEHWYILRTHHR--ICSAFVGSVPS 242
K SQ H+ I +EK Y +S YI+ H ++ GS P
Sbjct: 359 KNGEKSQTTLHKTFHDRISTDSLLEKHKSYSGRIDSPFSYIVMVHGIPIFTGSYFGSPP- 417
Query: 243 FPRQND-FLGLPIALSSEETALLVEKRICEIHEMPAEFCKYEPTE-KDKELMEEFLKKVL 416
P+ + F+ P + T + ++R +I K +E K+KE + KK L
Sbjct: 418 -PKSSQVFINAPERIRHRRTIITKKRRNTKITRKQRLLRKVRKSEEKEKEKDRKRAKKAL 476
Query: 417 EQQASALKKRK 449
+ ++ KKRK
Sbjct: 477 IKNSNLKKKRK 487
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,988,401
Number of Sequences: 27780
Number of extensions: 385990
Number of successful extensions: 1096
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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