Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_B13
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.51 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   3.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = +3

Query: 375 KDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVAG 491
           KD+++M+   +K++E++    +K K + L+  ++IIV G
Sbjct: 451 KDRKIMDMVREKIIEEK----RKNKNKNLTPAVNIIVKG 485


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 480 IVAGKKKNLINKGMSGR*MLLWNVASDIVII*IIGLQW 593
           ++A  + N+I KG+SG+ + +      I+ I +  L W
Sbjct: 145 MIAFDRYNVIVKGLSGKPLSINGALIRIIAIWLFSLGW 182


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 480 IVAGKKKNLINKGMSGR*MLLWNVASDIVII*IIGLQW 593
           ++A  + N+I KG+SG+ + +      I+ I +  L W
Sbjct: 111 MIAFDRYNVIVKGLSGKPLSINGALIRIIAIWLFSLGW 148


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 480 IVAGKKKNLINKGMSGR*MLLWNVASDIVII*IIGLQW 593
           ++A  + N+I KG+SG+ + +      I+ I +  L W
Sbjct: 21  MIAFDRYNVIVKGLSGKPLSINGALIRIIAIWLFSLGW 58


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
          kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 34 LKNLRSHLDKFV 69
          ++ LRSHLDKF+
Sbjct: 32 IQELRSHLDKFL 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,054
Number of Sequences: 438
Number of extensions: 5201
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)