Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_B12
(971 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.43
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.75
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.75
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.43
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = +1
Query: 781 PPXPXXXPXKNSXPQXXGVGKPXXXPPXGXKXFPPXXPPXGPPPXPXPGPXP 936
P P P P + P P G PP PP P P P P P P
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPL---PAGMPAAPPL-PPAAPAPPPAPAPAP 484
Score = 29.9 bits (64), Expect = 0.57
Identities = 23/80 (28%), Positives = 23/80 (28%), Gaps = 10/80 (12%)
Frame = +1
Query: 754 PXXGXFFQXPPXPXXXPXKNSXP----QXXGVGKPXXXPPXGXKXFPPXXPPXG------ 903
P G PP P P P V P PP P PP G
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413
Query: 904 PPPXPXPGPXPXSXGXXXPP 963
PP P P P S PP
Sbjct: 414 TPPVPTPPSLPPSAPPSLPP 433
Score = 29.1 bits (62), Expect = 0.99
Identities = 26/98 (26%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Frame = +1
Query: 676 PEPRG--NXGKNPGNQXATKGPENXKKXPXXGXFFQXPPXPXXXPXKN-SXPQXXGVGKP 846
P PR + G+ P +++ N P P P P N S V P
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP---PLGNASRTSTPPVPTP 420
Query: 847 XXXPPXGXKXFPPXXPPXGPPPXPXPGPXPXSXGXXXP 960
PP PP PP P P P P S P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 25.8 bits (54), Expect = 9.2
Identities = 18/63 (28%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Frame = +1
Query: 781 PPXPXXXPXKNSXPQXXGVGKPXXX--PPXGXKXFPPXXPPXGPPPXPXPGPXPXSXGXX 954
PP P S P +G PP PP PP PP P P G
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPT---PPSLPPSAPPSLPPSAPPSLPMGAP 444
Query: 955 XPP 963
P
Sbjct: 445 AAP 447
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.75
Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +1
Query: 790 PXXXPXKNSXPQXXGVGKPXXXPPXGXKXFPPXXPPX--GPPPXPXPGPXPXSXGXXXP- 960
P P + PQ + P PP PP PP GPP P P P P S P
Sbjct: 1690 PPVRPQSAAPPQ---MSAPTPPPPPMSVPPPPSAPPMPAGPPSAP-PPPLPASSAPSVPN 1745
Query: 961 PG 966
PG
Sbjct: 1746 PG 1747
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.75
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 789 PXXXPXKKLXPXXXXGGETPXPPPKXXQGVSPXXXPP 899
P P P GG P PPP G P PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 29.1 bits (62), Expect = 0.99
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 880 PPXXPPXGPPPXPXPGPXPXSXGXXXPP 963
PP P G PP P P P G PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +1
Query: 784 PXPXXXPXKNSXPQXXGVGKPXXXPPXGXKXFPPXXPPXGPPPXPXPGPXPXSXG 948
P P P P +G P PP PP GPPP P P P + G
Sbjct: 742 PTPAPAPIPVPPPAPI-MGGPPPPPP------PPGVAGAGPPPPPPPPPAVSAGG 789
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +1
Query: 892 PPXGPPPXPXPGPXPXSXGXXXPP 963
P P P P P P P G PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPP 765
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 838 GKPXXXPPXGXKXFPPXXPPXGPPPXPXPG 927
G P PP P PP PPP P PG
Sbjct: 7 GNPPPPPPP-----PGFEPPSQPPPPPPPG 31
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 880 PPXXPPXGPPPXPXPGPXPXSXGXXXPP 963
PP PP PP P PG P S PP
Sbjct: 5 PPGNPP---PPPPPPGFEPPSQPPPPPP 29
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 859 PXGXKXFPPXXPPXGPPPXPXPGPXP 936
P G PP P PP P P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 7.0
Identities = 19/63 (30%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Frame = +1
Query: 781 PPXPXXXPXKNSXPQXXGVGKPXXXPPXGXKXFPPXXPPXGPPPXPXP--GPXPXSXGXX 954
PP P P P P G PP PP PP P P G P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGV---PPVPPPSEAPPVPKPSVGVPPVPPPST 1215
Query: 955 XPP 963
PP
Sbjct: 1216 APP 1218
Score = 25.8 bits (54), Expect = 9.2
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Frame = +1
Query: 784 PXPXXXPXKNSXPQXXGVGKPXXXPPXGXKX---FPPXXPPXGPPPXPXPG----PXPXS 942
P P P + V KP P K PP P G PP P P P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Query: 943 XGXXXPP 963
G P
Sbjct: 1137 SGAPPVP 1143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.147 0.503
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,260
Number of Sequences: 5004
Number of extensions: 16944
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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